Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq393 136 8e-30 >seq393 Length=22713 Score = 136 bits (150), Expect = 8e-30 Identities = 145/188 (77%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77 |||||| | | |||| || || | ||||||||||||| |||||||||||||||||||| | Sbjct 3080 CTTCTTCC-CTCACGTGGTATCG-CTGGATCAGGCTTGCGCCCATTGTCCAATATTCCTC 3023 Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137 ||||| ||||| | |||| ||| | | | ||| | ||| |||| ||||||||||| Sbjct 3022 ACTGCAGCCTCT--TTCGAGTTTGGCCTTTTTTTCAATGCCAATGTGGATGATCATCCTC 2965 Query 138 TCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || | || |||| ||| | | |||||| |||| |||||| |||||||| ||||| || Sbjct 2964 CCAAATCACCTACGAATCCTTGGCTTGGTAAGCCTTTACCTTACCAACTACCTAATTCGC 2905 Query 198 CCTAGGCT 205 | || ||| Sbjct 2904 CATAAGCT 2897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071986835840