Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq393 215 2e-53 >seq393 Length=22713 Score = 215 bits (238), Expect = 2e-53 Identities = 249/330 (75%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||||||||||| ||||||||||| | | ||| |||| || || |||| Sbjct 2909 ATTAGGTAGTTGGTAAGGTAAAGGCTTACCAAGCCAAGGATTCGTAGGTGATTTGGGAGG 2968 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| ||||||||| | ||| | | | |||||||| | | |||| |||||| || Sbjct 2969 ATGATCATCCACATTGGCATTGAAAAAAAGGCCAAACTCGAAAG--AGGCTGCAGTGAGG 3026 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| ||||||||| ||||||||| |||| | || |||||| || |||| | Sbjct 3027 AATATTGGACAATGGGCGCAAGCCTGATCCAGCGATACCACGTGAGGGAAGAAG----TA 3082 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGC 407 | |||||| |||| | |||| ||| || ||| | || | || ||| |||||| Sbjct 3083 AAG-CGTAAACCTCTTTTAATAAGGGAGAAAAAGACATGAATTAAAGAAAAAGTCCCGGC 3141 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||| | |||||||||||||||||||| ||| ||||||| ||| |||| || || | | | Sbjct 3142 TAATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCAAGCATTATTCGTAA-GAATTG 3200 Query 468 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||||||||||| |||||| |||| |||| Sbjct 3201 GGCGTAAAGGGTATGTAGGTTGTTT-TTAA 3229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497581609472