Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq835 273 7e-71 >seq835 Length=6782 Score = 273 bits (302), Expect = 7e-71 Identities = 377/519 (73%), Gaps = 34/519 (7%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||| ||||||| || |||| | | ||| |||||||||||||||| ||||| Sbjct 1701 TCATTTCAATTACCCTTCCAAAAATGGTTAGGCATCGATATTTATTGTCACTACTTCCCC 1642 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 || | ||||||| ||||||||||||||||||||||||| | || ||||||||| |||||| Sbjct 1641 GTATTGGGATTGAGTAATTTGCGCGCCTGCTGCCTTCCGTAGAAGTGGTAGCCATTTCTC 1582 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1581 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGTAGGCC 1522 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || | |||||||||||||||||||||||| ||| || | | | |||| Sbjct 1521 AATACCGTACCATCGAAAGTTGATAGGGCAG-----TGA---CACAGTAGACTTGTCAAA 1470 Query 245 GCCA----TGCGATTCGTTAAGTTATTATGAATCACCAA-GGAGCCCCGAAGGGCGTTGG 299 | | | ||| | | ||||| | ||||||| || ||| ||| |||| Sbjct 1469 GATAAATCTTTGATCTGCAATATTATTCGGTTTCACCAACAGAACCCTTGCGGGTATTGG 1410 Query 300 TTTTTTATCTAATAAATAC--ACCCCTTCCGAAGT--------CGGGGTTTTTAGCATGT 349 || | ||||||| | | | ||| || | | | || | |||| Sbjct 1409 TTGAAT-GCTAATAATCGCGGAGCTCTTGATAAATCAATCACCCCTCGCTTCT---ATGT 1354 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA---TCAAATAAACGAT 406 |||||| | || |||| |||||||||| |||| | | || | || || Sbjct 1353 ATTAGC-CCCGATTTACTGCGGTTATCCAAAAGGTAAAACCCGAAAGTCTATTAGTTTAT 1295 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGC 465 |||| | ||||||||| | ||||||||| ||| ||| | |||||||||||||||| Sbjct 1294 CACTGTTGTAATGAGCCGTCTGCAGTTTCATCGTACAAGAAT--TTATACTTAGACATGC 1237 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| Sbjct 1236 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510381452288