Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq697 161 8e-35 seq2 149 5e-31 >seq697 Length=10231 Score = 161 bits (178), Expect = 8e-35 Identities = 307/442 (69%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGGAACGT 61263 |||| ||||| || || || || || ||||| |||||||| ||| || || || Sbjct 5513 ATGTTTTGGCCTTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCTTGCCACAAAGT 5572 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || || ||| | | ||||| | |||||||| |||||||| |||||||| Sbjct 5573 TTAT-GAGTGAAGTTCAAATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAATTGCCATT 5631 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC--AGGGAGCGGG 61381 || || |||| || |||| |||||| | | ||||| || |||||| || |||| | Sbjct 5632 GAAAACATCCATTCAGAGACCTACAGTCTCTTGATCGACACCTACATCCAAGACAGCGTG 5691 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | || | | | | | ||||| ||||||||||| || || ||||| ||| || | Sbjct 5692 -GAAAAGAGCAA-ACTATTCAACGCCATCGAGACCATCCCCTGTGTGAAAAAGAAGGCCG 5749 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 | ||||| || | |||||||||| ||| | | |||||| ||||| || | || | Sbjct 5750 ACTGGGCATTGAGATGGATCACCA--ACAGCAAAT-CATTTGCCGAACGTTTAGTTGCCT 5806 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | ||||||||| | |||||||| || ||| | | ||||||||| | |||| Sbjct 5807 TTGCCGCCGTCGAGGGTATCTTTTTCAGCGGCAGTTTTTGCTCTATCTTTTGGCTCAAGA 5866 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 ||||||| | ||||||||| |||| ||| || ||| | || || |||||||| Sbjct 5867 AACGTGGTTTGATGCCCGGTTTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTC 5926 Query 61622 TGCATTGTGATTTTG-CTGTTT 61642 | || || | |||| |||||| Sbjct 5927 TCCACTGCAACTTTGCCTGTTT 5948 >seq2 Length=160969 Score = 149 bits (164), Expect = 5e-31 Identities = 390/586 (67%), Gaps = 13/586 (2%) Strand=Plus/Minus Query 65990 ACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCG 66049 || ||| | ||||| | |||| ||| || | ||||| || || | || || || | | Sbjct 39136 ACAACATATTTGGGCAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAG 39077 Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || || | ||| ||||| ||||| || || |||| | |||||||| | || |||||| Sbjct 39076 GTGTATTGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGA 39017 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || || |||||| ||||| ||||| | ||| | || || || || || | |||| Sbjct 39016 TTGGATTTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGG 38957 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTT-- 66227 | || | ||||| ||| || | | || || | | ||| || | || Sbjct 38956 GCTTCGAGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGT 38897 Query 66228 -TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC-AT---ACTTCGGACA- 66281 || |||||| || ||||| | ||| || | || | | || ||| ||| || Sbjct 38896 GTGGCTTCGTATTGGAGATAGAGTT-TTCTAA--ACTCTTCGCTATGGCACT-CGGCCAA 38841 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 | || || | | || ||||| | || |||||||| | | || || || | || Sbjct 38840 GCCAGGGGCT-TCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCA 38782 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 |||| || ||| | |||||||||||| ||||| || | |||| ||||| ||| Sbjct 38781 TAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGC 38722 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 |||| || || ||| |||| |||||||| || ||||| |||||||| |||| ||||| Sbjct 38721 CGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGA 38662 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 ||| || | ||| | | ||||| || |||||||||||||| | || | || | Sbjct 38661 CGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAA 38602 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||||||| | ||| || || | ||||| ||| |||| |||||||| Sbjct 38601 AGACACGAAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCC 38556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562049897920