Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq37 214 2e-50 seq41 192 8e-44 >seq37 Length=80241 Score = 214 bits (236), Expect = 2e-50 Identities = 508/763 (67%), Gaps = 31/763 (4%) Strand=Plus/Plus Query 162100 AAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCTC 162159 ||||| || | ||| | || ||||| || ||||||||||| || | | || | ||| Sbjct 19087 AAAGTTGCCTTGATTTCGGGTATCACCGGTCAAGATGGATCATATTTGACAGAGTTACTC 19146 Query 162160 CTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACACCCAC 162219 || || ||||| | || |||||||||||| | ||| | || |||| ||| | Sbjct 19147 ATTTCCAAGGGATACATTGTACACGGTATTATCAGACGTTCATCGTCATTTAATACCAGC 19206 Query 162220 AGAATTGACCATATCTTT---GACC---------GCA---------TCACTCTCCATTAT 162258 |||||||| ||| ||| | || | ||| | | |||||| ||| Sbjct 19207 AGAATTGAACATCTCTATCAAGATCAACACACTGGCAAGGGTAAGATGATTCTCCACTAT 19266 Query 162259 GGAGACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCAACCAGAT-GA 162317 || || || ||||| || | | || |||||||| | || |||||| | || Sbjct 19267 GGCGATCTCACCGACTCTACCAACTTGGTCTCTATTATCTCCA-AGGTCAACCCAACCGA 19325 Query 162318 AATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATACAC 162377 ||||||||| | || || || |||||||| ||||| || |||||| | | || ||||| Sbjct 19326 AATATATAATTTGGGCGCCCAAAGTCACGTCAAGGTCTCTTTTGATATGTCAGAGTACAC 19385 Query 162378 AGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTG--GT 162435 || | ||||| ||||| | || || | || || ||| ||||| || || | Sbjct 19386 CGCCAATGTCGACGGTTTGGGTGCACTCAGAATCCTCGATGCCATCCGT--TCATGCGGC 19443 Query 162436 ATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAG 162495 | ||| | || ||| |||||||||| |||||||||||| ||||| ||| || Sbjct 19444 CTCGAAAACAAGGTCAGATTCTACCAAGCCTCCACCAGTGAGCTCTATGGCAAAGTACAA 19503 Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 ||| || ||| || ||||| ||| | ||||| || || || || | || || || Sbjct 19504 GAGGTTCCACAGTCTGAGACCACCCCATTCTATCCCCGTTCACCATACGCCGTCGCCAAG 19563 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 | || || | ||||||| | ||||| | ||| ||| |||| | |||| | | Sbjct 19564 CAATTTGCCTACTGGATCTTGGTCAACTATCGTGAAGCCTACAACATGTACGCCTGCAAC 19623 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 |||||||| || |||||||| || | ||||| || || ||||| || || ||| Sbjct 19624 GGTATTCTCTTTAATCACGAGTCTCCAAGAAGAGGCCCCACTTTTGTCACTCGTAAAATC 19683 Query 162676 GTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA--AAGTGATCTACAACTTGGAAACC 162733 | || | || | || ||| | | || | | | |||| ||| | || || ||| Sbjct 19684 ACCAGATTCGTGGCACGTATTGCTCTTGGCCACAAAGAAGTCCTCT--ATCTCGGCAACA 19741 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 ||||||||| |||||| ||||| || |||||||| || || |||| ||||||| | ||| Sbjct 19742 TCAATGCCCAACGTGATTGGGGTCATGCCAAAGATTATGTCGAGGGTATGTGGCTCATGT 19801 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 | || ||||| || ||||| |||||||| | || || ||||| Sbjct 19802 TACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGA 19844 >seq41 Length=78064 Score = 192 bits (212), Expect = 8e-44 Identities = 400/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 162249 TCTCCATTATGGAGACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCA 162308 |||||| |||||||| || || || || | | || |||||||| | ||| | Sbjct 28725 TCTCCACTATGGAGATCTCACAGACTCTACCAACTTGGTCTCTATTATCTCCAAAGTCAA 28666 Query 162309 ACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCC 162368 || ||||| |||||| | || || || |||||||| ||||| || ||||| | | Sbjct 28665 TCCCACCGAAATCTATAACTTGGGTGCCCAAAGTCACGTCAAGGTCTCTTTTGACATGTC 28606 Query 162369 TGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCT 162428 |||||||| || | ||||| ||||| | || || | || || ||| ||||| Sbjct 28605 AGAATACACTGCCAATGTCGACGGTTTGGGTGCACTCAGAATCCTCGATGCCATCCGT-- 28548 Query 162429 TCTTG--GTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGG 162486 || || || | ||| | || ||| |||||||||| |||||||||||| ||||| Sbjct 28547 TCATGAGGTCTCGAAAACAAGGTTAGATTCTACCAAGCCTCCACCAGTGAGCTCTATGGC 28488 Query 162487 CTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGA 162546 ||||| ||| || || || ||||| ||| | ||||| || || || || | Sbjct 28487 AAGGTTCAAGAGGTTCCACAATCCGAGACCACCCCATTCTATCCCCGTTCACCATACGCT 28428 Query 162547 GTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACAT 162606 |||| |||| || || | ||||||| | ||||| | ||| ||| |||| | Sbjct 28427 CTTGCCAAACAATTTGCCTACTGGATCTTGGTCAACTATCGTGAAGCCTACAACATGTAC 28368 Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| | ||||||||| || ||||||||| || | ||||| || || ||||| Sbjct 28367 GCCTGCAACGGTATTCTCTTTAATCACGAATCTCCAAGAAGAGGTCCCACTTTTGTCACT 28308 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAA--AGTGATCTACAAC 162724 || || ||| || | || | || ||| | | || | | || ||| |||| | Sbjct 28307 CGTAAAATCACTAGATTCGTGGCACGTATTGCTCTTGGTCACAAAGAAGTACTCTAT--C 28250 Query 162725 TTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGT 162784 | || ||| || |||||| |||||| ||||| || ||||||||||| || || | |||| Sbjct 28249 TCGGCAACATCTATGCCCAACGTGATTGGGGCCATGCCAAAGACTATGTCGAAGGAATGT 28190 Query 162785 GGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 || | ||| | || ||||| || ||||| |||||||| | || || ||||| Sbjct 28189 GGCTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGA 28138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691448586101280