Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1441 122 7e-23 >seq1441 Length=33442 Score = 122 bits (134), Expect = 7e-23 Identities = 521/828 (63%), Gaps = 63/828 (8%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||||||||| ||||| | ||||| || ||||| || || | ||| || | || || Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGCAGTG 2423 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | ||| |||||||||| || || | ||||| || | |||||||| || Sbjct 2422 TACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTG 2363 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| | ||| || |||||||| | ||| || || || |||||||||| || || Sbjct 2362 CTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGAGAG 2303 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCC--TACCTTTGC 66230 || | ||||| | ||| ||| | | ||||| | ||| | | | | | | || || Sbjct 2302 TCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGT-CTTTCTGGCGAGTCCCGGTGT 2244 Query 66231 G--TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA--T 66286 | |||||| | | ||| | || || || || ||||| || ||| |||| | Sbjct 2243 GGCTTCGTACTTGTTGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGACCCTT 2184 Query 66287 GGACACTT-GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 || ||| || ||||| | | ||||| || ||||| | || || | |||||| Sbjct 2183 GG---CTTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCATAAA 2127 Query 66346 TAGATCAGGTATCC--------------------------------------------AG 66361 ||||| || |||| || Sbjct 2126 CAGATCGGGGATCCTGGGAAACTCAATGAAATTCCAGTGAAATTTAGAATTACGTACCAG 2067 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 |||||||| ||||| || ||||||| ||| || | |||||||| || | | || Sbjct 2066 AGGGCGTAAAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTTCTGAGATCC 2007 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 | ||||| |||||||||||||||||| ||||| || | ||| || | ||| | | Sbjct 2006 AAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTTCCTC 1947 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 || || || ||||||||||| || || || | |||||||| | | ||| || ||| Sbjct 1946 TTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGGACG 1887 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA 66601 || || ||||| ||||| || || |||| || || | || | ||| Sbjct 1886 AGTCCATTAGAGGCACCATTTGTTCCTCTGATGTAACTGTCTGCAGCTCTGATCTTGTGG 1827 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC----CACTGT 66657 || |||||| || || ||||| | || |||||| ||| || | || | ||| Sbjct 1826 GCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCA--CTGCTTTAGAGTGT 1769 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | | || || || || || || |||| ||| || ||| |||| ||| | || Sbjct 1768 C--GTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCTG 1711 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 ||| | |||||| | | ||| || |||||||| ||||| || || Sbjct 1710 AGGTCTTGGTGTGCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAA 1663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555513507280