Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1032 203 8e-50 seq1033 118 2e-24 >seq1032 Length=2514 Score = 203 bits (224), Expect = 8e-50 Identities = 297/411 (72%), Gaps = 18/411 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| || |||| |||| |||||| ||| || |||| | |||| | ||| | Sbjct 2223 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 2164 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| | || | ||||||||||| || Sbjct 2163 CAGGAACCCTTGGAATTTCGGCGACAGTGCATCTCACACTGTTAATCGCTACTCATGTCT 2104 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGAC-ACG 178 |||||| |||| | | |||||| || || | ||| | |||||| || | | ||| Sbjct 2103 GCATTCGCACTTCCGATACCTCCACGACCCATT-ACCAGATCGCTTCA--ACGGCCTACG 2047 Query 179 --ACGCTCCCCTACCCAACCACAC--AG-GTTG---CCACAGCTTCGGCGGATAACTTAA 230 ||||||| ||||| | ||| || | || || |||||||| | | ||| | Sbjct 2046 GAACGCTCCGCTACCGCTCAGCACTAAGTGCTGAACCCTAAGCTTCGGTGCACGTCTTGA 1987 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCT 285 |||||| ||||| ||| ||| | ||| ||| |||||||||||| |||||| ||| Sbjct 1986 GCCCCGTTACATCTTCGCCGCAGGATCTCTTATTTAGACCAGTGAGCTGTTACGCTTTCT 1927 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 || ||||||||||||||| ||||||||||||||||||| | | || |||||| ||||| Sbjct 1926 TTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAAATCCCACATGCTTTC 1867 Query 346 CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||||| || | |||| ||| ||||||||| | | ||||||||||||| Sbjct 1866 CCACTTAGACGTGACTTGGGGACCTTAGCTGTAGGTTAGGGCTGTTTCCCT 1816 >seq1033 Length=3252 Score = 118 bits (130), Expect = 2e-24 Identities = 117/149 (79%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 255 ATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACC 313 ||| || ||| |||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct 2869 ATCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACA 2810 Query 314 TCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTT 371 |||| | ||||| |||| || || || | | ||| || | | |||||| |||| Sbjct 2809 TCCTAGCTGTCTGTGCAATCGGACCTCGTTAGTTCAACTTAGCAATAATTTAGGGACCTT 2750 Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||||| |||||| | ||||||||||| Sbjct 2749 AGCTGATGGTCTGGGTTCTTTCCCTCTCG 2721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177573433344