Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1256 185 2e-44 >seq1256 Length=4999 Score = 185 bits (204), Expect = 2e-44 Identities = 149/178 (84%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 152 CGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT 211 |||||||||||||||||||| |||||| ||||| | || |||| ||| |||||| |||| Sbjct 2053 CGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTTC--CTTGTCCGAAAGGTCCGGGT 2110 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC-TTCAACGA 270 ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 2111 AATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGGTCGCGCAACGA 2170 Query 271 GGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || ||| |||| |||||| | | ||||||||||||||| |||||| Sbjct 2171 GGAATATCTCGTAGGCGCAGCTCATCAAACTGTGCCGATTACGTCCCTGCCATTTGTA 2228 Score = 123 bits (136), Expect = 5e-26 Identities = 85/96 (89%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 1657 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 1716 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGC 115 |||||||||||||||||||||||||||| ||||||| Sbjct 1717 AGGGACTATCGGCTCAAGCCGATGGAAGGTTGAGGC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947178631168