Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1033 421 2e-115 seq1032 141 3e-31 >seq1033 Length=3252 Score = 421 bits (466), Expect = 2e-115 Identities = 442/567 (78%), Gaps = 13/567 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | |||| || |||||| ||||||| ||||||||||||| Sbjct 2386 CGAGTCTGAAAAGGGCGTATAGTCAGGGGAGGTAGACGCGAAACCTTGTGATCTACCCAT 2445 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||||| |||||| | ||||||| ||||||| | || |||||||| | Sbjct 2446 GGGCAGGTTGAAGGTGCCGTAACAGGTACTGGAGGACCGAACCGATAAACGTTGAAAAGT 2505 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||||||||||||||||||||||| |||||| |||||||||| || ||| Sbjct 2506 TTCCGGATGACTTGTGGGTAGGGGTGAAAGGCTAATCAAACTGGGAAATAGCTCGTACTC 2565 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC-ATCGGG-GGTAGAGC-ACTGTTA 237 |||||| | |||||| | |||| | | | || | |||||||| ||| | Sbjct 2566 CCCGAAATGTTTTTAGGAACAGCCTGGCGGTTGAGTTATAAAGAGGTAGAGCTACTAAT- 2624 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC-ATCAGTTT 296 ||| | |||| | | ||||||| | ||||||||||||| || | | Sbjct 2625 TGGGTGCGGGGGAGTCAAATCCTACCAAATCCAGATAAACTCCGAATGCTTTATAA--TA 2682 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 ||| || ||||||||| |||||||||||||||| || |||||||| ||||| || ||| Sbjct 2683 TAC-GCTGGAGTGAGGCTATGGGTGCTAAGGTCCATGGCCGAGAGGGAAAGAACCCAGAC 2741 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||||| ||| |||| | |||||||| ||||||||| ||| |||||| |||| Sbjct 2742 CATCAGCTAAGGTCCCTAAATTATTGCTAAGTTGAACTAACGAGGTCCGATTGCACAGAC 2801 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2802 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 2861 Query 477 CGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-- 534 |||| |||||| |||||||||| |||| || ||| || ||||||||| ||| | Sbjct 2862 CGAGCGATCGGGCATGGATAATAAACGGGCATCAAGCAGTATACCGAAGCTATGGATTTG 2921 Query 535 CATTTATATGATC-GGTAGGGGAGCAT 560 || | || ||| ||||||||||||| Sbjct 2922 CAGTAAT-GCATCTGGTAGGGGAGCAT 2947 >seq1032 Length=2514 Score = 141 bits (156), Expect = 3e-31 Identities = 237/333 (71%), Gaps = 10/333 (3%) Strand=Plus/Plus Query 148 AAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCA 207 ||||| || ||| | ||||||||||||||||| ||||| ||||| |||||| || || Sbjct 1625 AAGGCCAATCAAGCCGGGAAATAGCTGGTTCTCCGCGAAATCTATTGAGGTAGAGCGTCG 1684 Query 208 AGTA-TCACCATCGGGGGTAGAGCACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAA 265 || | || | ||||||||||||||| |||| | ||||||| | || |||||| Sbjct 1685 GATATTTGCCGTTGGGGGTAGAGCACTG-GATGGTTGCGGGGGTC-GCGAGATCTACCAA 1742 Query 266 ACCATTGCAAACTCCGAATGCGCATCAGT-TTTACCGCGGGAGTGAGGGCATGGGTGCTA 324 | |||||||||||| | | ||| | ||| || || ||| |||||||| Sbjct 1743 TACTAACCAAACTCCGAATACCAACGAGTCTAGTCCGGCAGACAGACGGC--GGGTGCTA 1800 Query 325 AGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCT 384 |||||||| | | ||| || | || || ||||||||| ||| || | || || Sbjct 1801 AGGTCCGTCGTCAAAAGGGAAACAGCCCTAACCTACAGCTAAGGTCCCCAAGTCACGTCT 1860 Query 385 AAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCA 444 |||| | || | || |||| | || ||| | |||| |||||||| |||||||||| Sbjct 1861 AAGTGGGA--AAGCATGTGGGATTTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA 1918 Query 445 TTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||||||| ||||||||||||||| ||| Sbjct 1919 -TCCTTTAAAGAAAGCGTAACAGCTCACTGGTC 1950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689561882624