Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq565 374 3e-101 >seq565 Length=12296 Score = 374 bits (414), Expect = 3e-101 Identities = 302/363 (83%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 ||||||| ||||| || |||||| | || ||||||||||| ||| || || Sbjct 9080 CTTCATTCGATAAGTGAAGCAACGATCCGAGTGGTGGTATTTCATTTGTGCTTGC---GC 9136 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 | |||| ||| ||||||||| | ||| |||| || | |||| ||||||| |||||| Sbjct 9137 TACCACCTATACTACACCTCAGATGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAAC 9196 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||| Sbjct 9197 AGGGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGA 9256 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || || Sbjct 9257 TAGTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGA 9316 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 9317 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTCGG 9376 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA-ACATCA 536 ||||| || |||| ||||||||||||||||||||||||||||| ||||| || ||| || Sbjct 9377 TGAATCTCGTCACATTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGACATACACCA 9436 Query 537 CTT 539 ||| Sbjct 9437 CTT 9439 Score = 114 bits (126), Expect = 4e-23 Identities = 91/108 (84%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || ||||| ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 8773 CTTGTGTTCTACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 8832 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 8833 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 8880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635163109888