Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1256 753 0.0 seq566 143 8e-32 seq565 86.0 2e-14 >seq1256 Length=4999 Score = 753 bits (834), Expect = 0.0 Identities = 470/504 (93%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 693 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 692 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 633 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 632 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 573 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 572 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCA 513 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||| Sbjct 512 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 453 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 452 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 393 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 392 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 333 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 332 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 274 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 273 AGACAAGCATATGACTACTGGCAG 250 >seq566 Length=6505 Score = 143 bits (158), Expect = 8e-32 Identities = 139/177 (79%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGT----CGGGATTGGGTAATTTGCGCGCCTGCTGCC 98 ||||| || || || |||| ||| | || |||||| ||||||||||||||||||| Sbjct 1442 TATTTCTTTTCGCTGCCTCATCGTTTTTATCGACATTGGGCAATTTGCGCGCCTGCTGCC 1383 Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||| | || |||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1382 CTCCGTAGAAGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCCCC 1323 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 | | ||||| | |||||| || |||||| | ||||| | ||||||||||| Sbjct 1322 GCT-CCCGTCAACGCCATGGCAGTCCACTACACGGCCATCACTGGCTGATAGGGCAG 1267 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCAT 467 ||||| ||||||||||| ||||| ||| ||| | | | || || || || ||||||| Sbjct 1015 CTGATGTAATGAGCCATGCGCAGATTC-CTGCAATGCAGTGATT---CTGAGGCATGCAT 960 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| || |||| |||||||||||||||||||||| Sbjct 959 GGCTTAGTCCTTGAAACAAGCATATGACTACTGGCAG 923 >seq565 Length=12296 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCAT 467 ||||| ||||||||||| ||||| ||| ||| | | | || || || || ||||||| Sbjct 5491 CTGATGTAATGAGCCATGCGCAGATTC-CTGCAATGCAGTGATT---CTGAGGCATGCAT 5546 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| || |||| |||||||||||||||||||||| Sbjct 5547 GGCTTAGTCCTTGAAACAAGCATATGACTACTGGCAG 5583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510365925376