Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1779 233 2e-56 seq564 170 2e-37 >seq1779 Length=53708 Score = 233 bits (258), Expect = 2e-56 Identities = 619/925 (67%), Gaps = 23/925 (2%) Strand=Plus/Plus Query 61017 CACCAGCAATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGA 61076 |||| | |||| || || ||| || || |||| || ||||| | ||||||||| Sbjct 28348 CACCGCCGATGAGCCGCTGCTGCGTGAAAACCCTCACCGCTTCGTGCTCTTCCCCATCAC 28407 Query 61077 GTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGG 61135 ||| ||| || ||| | |||||| |||| || |||| | ||||||||| |||||| Sbjct 28408 CTATCCGGACATCTGGAAGAAGTACAAGGAGGCCGAGAGCT-CGTTCTGGACGATGGAGG 28466 Query 61136 AGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACAT 61194 || |||| || || |||||||| |||||||| ||| | | ||| || || | || Sbjct 28467 AGATCGACCTGGGCAGCGACATGAAGGACTGGGACGCGCTGAACGA-CGACGAGCGCCAC 28525 Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 ||||| || || | | |||||||| ||||| ||||| ||||| |||||| | Sbjct 28526 TTCATCAAGCACATCCTTGCGTTCTTCGCCGCCAGCGACGGCATCGTGCTTGAGAACCTC 28585 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313 || || ||| | || || |||| | | ||||| || || |||||||||||||| Sbjct 28586 GCCGAGCGCTTCATGACCGACGT-CAAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCA 28644 Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373 ||| || |||||||| ||||| || | |||||| | || ||||| || |||||| | Sbjct 28645 GATCGCGATGGAGAACATCCACAGCGAAACGTACAGCATGCTGATCGAGACCTACATCCG 28704 Query 61374 GGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG 61433 || | || | || |||| | || ||||||||||| || | |||| Sbjct 28705 CGACACCACCGAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCG 28764 Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGT--ACAACGGCTACATTTGGTGAACGA 61491 ||| ||||| |||||| | ||||||| ||| ||||| || | || | || || Sbjct 28765 GAAGGCGGAGTGGGCCATGCGCTGGATCA--AGTCGACAAC--CT-CCTTCGCCGAGCGC 28819 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549 | | || || || | ||| ||||| | | ||||| | | | | | || | | |||| Sbjct 28820 CTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCG-GCAGCTTCTG-CTCCATCT 28877 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 | ||| ||||||| || || || ||||| || || |||||| ||| ||| |||| || | Sbjct 28878 TCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGC 28937 Query 61610 GCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATC 61669 | ||||||||| | || || || || |||| | | | || |||||||| Sbjct 28938 GTGACGAGGGCCTCCACACCGACTTCGCGTGCATGCTGTACGAGAAGTACCTGGTGAACA 28997 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729 | | |||||||| | | ||||| || | || || || | ||||| |||| | Sbjct 28998 AGCTGAGCGAGGAGCGCATCCGCGAGATCATTGGCGACGCCGTGGCGATCGAGAAGGAGT 29057 Query 61730 T--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 | |||| ||||| | ||||| || ||||| ||||| | | || ||| | || Sbjct 29058 TCATCTG--CGACGCGCTCCCCGTGCGTCTGATCGGAATGAACTCCGATCTGATGGCCCA 29115 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTC-GATTTGGGTATGAAGCGGATCTATA 61846 ||| || || || ||||| ||||||||| || || |||| | | || ||| | Sbjct 29116 GTACATCGAGTTCGTTGCGGACCGTCTGCTGATCACGCTTGGCCACG-AGACGATTTTCG 29174 Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906 | || ||||| || || |||||||| ||||| || || | ||||||||||| || | Sbjct 29175 GCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAGGCAAGACGAACTTCT 29234 Query 61907 TCGAGAAACGTGTAGGCGACTATCA 61931 ||||||| || ||||| || || Sbjct 29235 TCGAGAAGAAGGTCGGCGAGTACCA 29259 >seq564 Length=19258 Score = 170 bits (188), Expect = 2e-37 Identities = 510/779 (65%), Gaps = 30/779 (4%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||| || || |||||||| ||||| | |||||| || | || ||||| ||| Sbjct 17474 GGAAGTGCAATCGACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACA 17415 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || || ||| || |||||||| |||| ||| || ||||| Sbjct 17414 ATCTCTGTGCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTG 17355 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||||| |||||| || |||||||| |||| || ||||||| ||| Sbjct 17354 TTGCAAGCATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATC 17295 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241 ||| ||| || | | | ||| | | | || |||| ||| | | | Sbjct 17294 GCGAACCACAGTTCTTG-GGCTTGAATGGTCTTA-----ATACC---GCGGCCCTCAGTC 17244 Query 66242 TCGTAGAGGTGTTCGAA------GGATTCA-CCCCATA--CTTCGGACAGACATGGACAC 66292 |||||| | || | || | | ||| | ||||| || | || | ||| Sbjct 17243 TCGTAGCGCTGGTACAACGCCTCGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCG 17184 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 || || ||| || | ||| | | | || ||| ||||| ||| || | ||| Sbjct 17183 GAGTTGGGGTCCATGAGAGTCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCA 17124 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTG 66412 || ||||| || ||||||| | || || || || || || || |||| | | ||| Sbjct 17123 GGGATCCAAAGCCCGTAGAACAAGTCTCGAGCACGCTGTTCATCCTTGCC---AGTGTTG 17067 Query 66413 CGC-----AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 ||| |||| | ||| ||||| ||||| | ||||| || |||||||| | |||| Sbjct 17066 CGCTTCAGAAGT--AAGAAGTCAAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGA 17009 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 ||| ||| | || ||||||||||| || || ||||| || ||| ||||| | |||| Sbjct 17008 ACGCACCCTTGCGCTTGCCGCCACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACAC 16949 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTG 66587 | | | || || || ||||| || |||| || || || |||| | || | | Sbjct 16948 GAAGAAGGGGAACAAGGCCGTTGGACGTGCCGTTCGTACCACTGATGTACGCGCC-GGAG 16890 Query 66588 C-CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 | || ||| ||| | | ||| || ||||||||||| | ||| |||| |||| Sbjct 16889 CTGCGGATACAGTGGATGTGCAGGCCGATACCACCGGCAGCCTTGCTGATGCGAGCAGCT 16830 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 | | || | | ||||| || |||||||| |||| || | || ||| |||| Sbjct 16829 TGCTTGAGGGTATCGTAGATGCCTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAA 16770 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || | || |||| ||| ||| |||| ||| ||||| || || |||||||| || Sbjct 16769 GACGACATCTGCGGTTGGGGAGTGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAA 16711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557068867840