Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq386 123 3e-23 seq1033 91.5 2e-13 >seq386 Length=26907 Score = 123 bits (136), Expect = 3e-23 Identities = 386/593 (65%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 162099 GAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCT 162158 ||| || || ||||| ||||| ||||| || ||||| || || || || ||||| || || Sbjct 12779 GAAGGTTGCTCTTATCACTGGCATCACCGGCCAAGACGGCTCGTATCTCGCTGAGCTGCT 12838 Query 162159 CCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACACCCA 162218 ||| |||| ||||| |||||||||||| |||| || || || |||| ||| | Sbjct 12839 GCTTGAGAAGGGATACGAGGTTCACGGTATTGTCCGCCGCGCCTCGTACTTTAATACCAA 12898 Query 162219 CAGAATTGACCATATCTTTGACCGCATCACTCTCCATTATGGAGACCTTACCGATGCTTT 162278 | |||||||| |||| || |||| | ||||| || || ||| | ||||| | Sbjct 12899 GCGCATTGACCACATCTACGAGAGCATTAAACTCCACTACGGCGACATGACCGACG---- 12954 Query 162279 GAGTATCG-TATCTA-----TTATTAAAACAGTTCAACCAGATGAAATATATAACCTAGG 162332 | | || | || | | || ||| | | || ||| || || ||||| | Sbjct 12955 --GCACCGTTCTCCACCACCTCGTTGCCACACTCAAGCCCACTGAGATTTACAACCTGGC 13012 Query 162333 GGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGC 162392 || ||| ||||| ||||| || || || |||||| ||||| || ||||| || || Sbjct 13013 TGCCCAGTCGCACGTGAAGGTGTCCTTCGACATGCCTGAGTACACCGCTCAGACAGATGC 13072 Query 162393 ATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGGTATGGAATCATAC--GTA 162450 | ||||| |||| | |||| || || |||| ||| | | | | || | | Sbjct 13073 CGTCGGCACCCTAAAGCTGCTCGACGCGATCCGAGCCAACGGTCT-CATTGACACCTGCA 13131 Query 162451 AGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAA 162510 || |||||||||| |||| ||||| || || || ||||||| || |||| Sbjct 13132 AG-TTCTACCAAGCCTCCACCTCGGAGCTGTACGGCAAGGTCCAGGAGATTCCTCAGACG 13190 Query 162511 GAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGG 162570 || || || || | || || || ||| || | ||| || || || || | | |||| Sbjct 13191 GAGACGACCCCCTTCTACCCCCGTAGCCCCTACGCAGTCGCCAAGCTGTACGCTTACTGG 13250 Query 162571 ATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAAT 162630 || | | |||||| | || ||| | || || | | ||||||||| || ||| Sbjct 13251 ATTACTATCAACTACCGTGAGGCCTACGGTATCTTCGCTACCAACGGTATTCTGTTTAAT 13310 Query 162631 CACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGC 162683 |||||| | || | || | ||||||||||| | ||||| || || || Sbjct 13311 CACGAATCTCCCCGTCGCGGCGCCACGTTCGTCACGCAAAAGATTGTTCGTGC 13363 >seq1033 Length=3252 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 1374 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 1433 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 1434 TCCGTTATTCTCCAC 1448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691439700850560