Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq956 123 1e-25 >seq956 Length=9415 Score = 123 bits (136), Expect = 1e-25 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| ||||||||||| ||||||||||| |||||| | ||||||||| | |||||| | Sbjct 4227 CTGTTTGGACCCGAAAGGTGGTGAACTATACCTGAACAAGGTGAAGCCCGGGGAAACCCA 4168 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||||| | |||| | ||| ||||||||||| |||| |||||||||| || ||| Sbjct 4167 GGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGTATGATTTGGGTATCGGAGCG 4108 Query 683 A 683 | Sbjct 4107 A 4107 Score = 116 bits (128), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||||||||||||||| || | ||| ||||| | ||| |||||| |||||| | | Sbjct 4763 TGTTTGGGAATGCAGTGTCAAGTTGGCAGGTATTTGTCTGCTAAAGTTAAATACAGAGTA 4704 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 4703 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 4644 Query 165 GTTAAAAAGCACGTGAA 181 || ||| || || |||| Sbjct 4643 GTGAAATAGAACCTGAA 4627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079888481450