Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq523 233 2e-56 seq2277 232 5e-56 >seq523 Length=17530 Score = 233 bits (258), Expect = 2e-56 Identities = 540/802 (67%), Gaps = 14/802 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||| | || ||||||||||| || || |||| || || | || |||||||| Sbjct 1353 GGCAGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACG 1412 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| |||||||| || ||| || ||||| | |||| || || ||||| Sbjct 1413 ATTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 1472 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| || |||||||||| ||| |||| ||||||||| | || ||||| | |||| Sbjct 1473 TTGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATG 1532 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTT-TGCGTTCGTAATG 66240 || ||| | | | |||| | ||| | || | | || | ||| | |||| | Sbjct 1533 GCAAACCACACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCTGCCT-CGTACTT 1591 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||||| ||| | ||||| || || | || ||| | || ||| | || Sbjct 1592 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCTCGG 1651 Query 66301 ACACATCAGCGACCAATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 |||||||| ||| | || || || ||| || || ||| || || || || |||| Sbjct 1652 GTCCATCAGCGTCCACTTCCCCTCGCTCTTC-ACTCGCTTCATGAACAGGTCCGGGATCC 1710 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA--A 66417 | || ||||||||||| || || || || || || || ||||| | |||||| | Sbjct 1711 ACAGCGCGTAGAAGAGGTCACGCGCGCGCTGGTCGTCCTTGCCGG---TGTTGCGCTTCA 1767 Query 66418 GTCG-AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCA 66476 | | || || | ||||||||||||||||| || ||||||||||||||||| | ||| Sbjct 1768 GCAGCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCT 1827 Query 66477 TACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCG 66536 | || || ||||| || ||||| ||||| || || |||||||| ||||||| ||||| Sbjct 1828 TGCGCTTACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCG 1887 Query 66537 GTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATAT 66596 | || | ||||| || | || || |||||| ||||| | || | || || | Sbjct 1888 GCACCAAGCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGT 1947 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 ||| || | ||| || || || || |||| ||| |||| | || || || || | Sbjct 1948 TGTGGACGTGCAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCG 2007 Query 66657 TCCGGAATATGCCGTCAATGGAGTC-ACCCTTGATG-GTCAGGAGGTAGCATGAACTAAG 66714 | | | |||||||| ||| ||| || |||| | | || ||| |||| || || | Sbjct 2008 TGTCGTAGATGCCGTCGATGCTGTCTTCCTTTGAAGCGACA--AGGAAGCACGAGCTCAT 2065 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || || || ||| |||| ||||||||| || || ||||| || ||| | ||| Sbjct 2066 CTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCG 2125 Query 66775 AGACATGTAATTGTACGTCTCG 66796 ||||| | |||||||||| Sbjct 2126 CGACATCAGCTCGTACGTCTCG 2147 >seq2277 Length=2457 Score = 232 bits (256), Expect = 5e-56 Identities = 596/881 (68%), Gaps = 29/881 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTC 61122 ||||||| |||| ||| | || || ||||||| |||||| || ||| |||| | | | Sbjct 1397 TGTTCCCGATCGTGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT-C 1339 Query 61123 TGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAG 61181 |||||| |||||||| |||| || ||| |||||| ||||||| | | | | ||| Sbjct 1338 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGCGCGACTGGGTGAAGCTGAACGA- 1280 Query 61182 CGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGT 61241 ||| || | || ||||| || || ||| |||||||||| |||| ||||| ||||| Sbjct 1279 CGGGGAGCGGCACTTCATCAAGCACGTGCTGGCGTTCTTCGCCGGCAGCGACGGGATCGT 1220 Query 61242 CAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 | ||||| | ||| || ||| | || ||| | ||| |||||||||| || Sbjct 1219 GATCGAGAACCTTGCGGAGCGGTTCATGGGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT 1160 Query 61302 CTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 |||||| |||||| | |||||||| |||||||||||| |||| || || | || Sbjct 1159 CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGA 1100 Query 61362 TACGTACATCAGGG--AGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 |||||||||| || |||| | ||| || || || | | || ||| ||||||| Sbjct 1099 CACGTACATCACGGACAGCGAGGAGAAGCTG--CGGCTGCTGCACGCGATCCAGACGATC 1042 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| | || ||| ||||| ||||| | |||||| || | | || | Sbjct 1041 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGGGAG--CGGC-GCGAGC 985 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || || || || | | || || | ||| ||||| | || ||| || ||||| Sbjct 984 TTCCAGGAGCGGCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTC 925 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| | || ||| ||||||| || || || ||||| || ||||| |||||||| ||| Sbjct 924 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAACGAG 865 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAA-ACGC-T 61657 |||| || |||||||||||| |||| || || || |||| | ||| ||| Sbjct 864 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGCGCAC 805 Query 61658 ATC-TGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAAC 61715 ||| | || | ||| || ||||| ||| |||| | |||| || ||||| | Sbjct 804 ATCAAGCACAAGCTGCCG-CG--CGAGCGCGTGCTGGAGA-TCATCGTGGACGCGGTGAA 749 Query 61716 TATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 ||||| | || || |||| ||||| |||| || || ||||||||||| | Sbjct 748 CATCGAGCGCGAGTTCATCTG--CGACGCGCTGCCGGTGCGGCTGATCGGCATGAA-CGC 692 Query 61774 GGA-CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-TTG-GTCGATTTGGGT 61830 ||| || ||||||||||| || || || || || ||||| ||| ||| |||| |||| Sbjct 691 GGAGCTGATGTCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTGTCG--CTGGGG 634 Query 61831 ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGAT 61890 || || | ||| | || | || || || |||||||| ||||| |||||| | Sbjct 633 CTGGAGAAGCACTACCACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAG 574 Query 61891 GGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||||||||| || |||||||| || ||||| || || Sbjct 573 GGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397542808973360