Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value SEQ12144 104 1e-16 SEQ10630 104 1e-16 SEQ10629 104 1e-16 seq3792 84.2 9e-11 >SEQ12144 Length=2121 Score = 104 bits (114), Expect = 1e-16 Identities = 185/266 (70%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||| || || || ||| |||||||| ||||||| ||||||| | ||||| | | Sbjct 1199 GTCATACGGGAAGGAATGGCGTGCGGGTTGATGATGAGGTCGGGCACCACGCCGTCGCGG 1258 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||| ||||||||||| | || | | |||||| ||||||||| ||||| ||| Sbjct 1259 TTGAAAGGCATGTCCTCCTGACGGAACTGAATACCGTTGGTGCCCTTCTGCCCGTGCCGG 1318 Query 449126 CTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTG-TGAAGCGCAGCACGATCTTGATGG 449183 |||||||||||||| || || ||||| | | || || ||| | | | |||| || Sbjct 1319 CTGCAGAACTTGTCACCGATGTTCGGGAT--CTTGATGGTGCGGATCTTCACCTTGGTGA 1376 Query 449184 AGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACCGACTCCACGACGGCGTCGTCGGTGC 449243 | ||| ||||| |||| | || || ||| |||||| ||| | | |||||| Sbjct 1377 AACGGTCGCCGT---TGTTCATCGTCAGCATCACCTTCTCCACCACGCCCTTCTCGGTGG 1433 Query 449244 CGCGGTAGATGGTGCTGCTGTCGTGC 449269 |||| || | ||||| |||| || Sbjct 1434 TGCGGGAGGTAATGCTGGCGTCGCGC 1459 >SEQ10630 Length=2617 Score = 104 bits (114), Expect = 1e-16 Identities = 185/266 (70%), Gaps = 7/266 (3%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||| || || || ||| |||||||| ||||||| ||||||| | ||||| | | Sbjct 923 GTCATACGGGAAGGAATGGCGTGCGGGTTGATGATGAGGTCGGGCACCACGCCGTCGCGG 864 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||| ||||||||||| | || | | |||||| ||||||||| ||||| ||| Sbjct 863 TTGAAAGGCATGTCCTCCTGACGGAACTGAATACCGTTGGTGCCCTTCTGCCCGTGCCGG 804 Query 449126 CTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTG-TGAAGCGCAGCACGATCTTGATGG 449183 |||||||||||||| || || ||||| | | || || ||| | | | |||| || Sbjct 803 CTGCAGAACTTGTCACCGATGTTCGGGAT--CTTGATGGTGCGGATCTTCACCTTGGTGA 746 Query 449184 AGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACCGACTCCACGACGGCGTCGTCGGTGC 449243 | ||| ||||| |||| | || || ||| |||||| ||| | | |||||| Sbjct 745 AACGGTCGCCGT---TGTTCATCGTCAGCATCACCTTCTCCACCACGCCCTTCTCGGTGG 689 Query 449244 CGCGGTAGATGGTGCTGCTGTCGTGC 449269 |||| || | ||||| |||| || Sbjct 688 TGCGGGAGGTAATGCTGGCGTCGCGC 663 >SEQ10629 Length=1811 Score = 104 bits (114), Expect = 1e-16 Identities = 185/266 (70%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||| || || || ||| |||||||| ||||||| ||||||| | ||||| | | Sbjct 568 GTCATACGGGAAGGAATGGCGTGCGGGTTGATGATGAGGTCGGGCACCACGCCGTCGCGG 627 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||| ||||||||||| | || | | |||||| ||||||||| ||||| ||| Sbjct 628 TTGAAAGGCATGTCCTCCTGACGGAACTGAATACCGTTGGTGCCCTTCTGCCCGTGCCGG 687 Query 449126 CTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTG-TGAAGCGCAGCACGATCTTGATGG 449183 |||||||||||||| || || ||||| | | || || ||| | | | |||| || Sbjct 688 CTGCAGAACTTGTCACCGATGTTCGGGAT--CTTGATGGTGCGGATCTTCACCTTGGTGA 745 Query 449184 AGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACCGACTCCACGACGGCGTCGTCGGTGC 449243 | ||| ||||| |||| | || || ||| |||||| ||| | | |||||| Sbjct 746 AACGGTCGCCGT---TGTTCATCGTCAGCATCACCTTCTCCACCACGCCCTTCTCGGTGG 802 Query 449244 CGCGGTAGATGGTGCTGCTGTCGTGC 449269 |||| || | ||||| |||| || Sbjct 803 TGCGGGAGGTAATGCTGGCGTCGCGC 828 >seq3792 Length=12403 Score = 84.2 bits (92), Expect = 9e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||| || |||| || | ||||| ||||| || ||||| || || |||| | || Sbjct 1410 GTCATACGACTCGGGAAGCCGTGCGGATTCATAATCATGTCCGGGCTCATGCCGCGCTCG 1469 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||||||||||||| || ||| | | || ||| ||||||||||| |||||||| Sbjct 1470 TTGAAGGGCATGTCCACGCCGTTTGCGATGAGCCCGACAACGCCCTTCTGACCGTGGCGA 1529 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGG 449151 | |||||||| ||| |||| || Sbjct 1530 GACGAAAACTTGTCGCCCGGCTCTGG 1555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084327864017334