Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq21851 850 0.0 seq24884 98.7 4e-18 >seq21851 Length=58864 Score = 850 bits (942), Expect = 0.0 Identities = 558/604 (92%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 ||||||||||| ||||||||||||||||| |||| |||||| ||||||||| |||||||| Sbjct 49521 TCGATCGCCTT-GGCACGGGAAGTGGCCT-GCTT-GGCTTT-CGAGGCGTTGGCCGAGAA 49466 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| ||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 49465 GCGGCT-GACGAAGGATT-GCAGCTCGGAGATCTGCGCTTTCTT-CTTGGCGTTGTCCGA 49409 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 49408 CAGCAACTGCTCGCGGGACTGGGTCGCCACGGTCATGTATTCGTCGTAGTTGCCCGGGAA 49349 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 49348 CAGGCGCAGCTCGCCGTAGTCCAGGTCGGCCATGTGGGTGCAGACGCTGTTCAGGAAGTG 49289 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 49288 ACGGTCGTGAGAGATGATGATCATCAGGCTGTTACGCTGGGTCAGGATGTTTTCCAGCCA 49229 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 |||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||||| Sbjct 49228 GCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGCTCGTCGAGCAGCAACACTTCCGGATC 49169 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 49168 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCTGGTGACACTTCACTCAT 49109 Query 421 CGGACCGAAGTGCTGCTCCA-GCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGG 479 ||| ||| ||||||||| | || || ||||||| |||||||||| ||||||||| |||| Sbjct 49108 CGGGCCGTTGTGCTGCTCGATGCCGA-TACCCAGGCCCAGCAGCAACTCACCGGCGCGGG 49050 Query 480 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGC 539 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 49049 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAAGTCGGTTTCCAGCTCGGCCACGGCCATGC 48990 Query 540 CGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCC 599 |||| |||||| ||||||||||||||||||| || | || ||||||||||||||||||| Sbjct 48989 CGTCGTCTTCGGTCATTTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGCCTTGACCTTCC 48930 Query 600 ACAG 603 |||| Sbjct 48929 ACAG 48926 >seq24884 Length=2167 Score = 98.7 bits (108), Expect = 4e-18 Identities = 156/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 199 GTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGAT 258 |||||| || ||| |||| || | | | ||||||| ||||||||| | |||| Sbjct 1225 GTCCAGTTCGAGGATGCGGGTTGCCAGGTTCTGCAGGAAGGAACGGTCGTGCG---TGAT 1281 Query 259 GATCATCAGG-----CTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTG 313 || || || | |||||| | | ||| | ||| |||||| ||| | | | Sbjct 1282 GAACAGCACGGCGCCCTGGAAATCCTTG--AGGGCTTCTTCAAGCCAGGCGATTGCGCCG 1339 Query 314 ATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCC 373 ||||||| ||||||||||||||||||||||| || || || || ||||||| ||| ||| Sbjct 1340 ATGTCCAGGTGGTTGGTCGGTTCGTCGAGCAGCAACAGATCCGGTTCGGAAACCAGGGCC 1399 Query 374 TGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCG 415 |||||||||| || || | |||||| ||||| |||| Sbjct 1400 TGGGCCAGCAGGACGCGGCGACGCCAGCCGCCGGACAATTCG 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1880835230148