Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= AAMG01001581.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value seq15241 215 2e-53 >seq15241 Length=9361 Score = 215 bits (238), Expect = 2e-53 Identities = 296/411 (72%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298 ||||||||||||||| || |||| |||| |||||||| || || |||||| | ||||| Sbjct 2534 CCACGGCTTGAGCCACAGGCCCATGCCCAGCAACACCACGGCCCCCGCCAGGGTGCTCAA 2593 Query 299 CCCCAACTGCCACCCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAG 358 ||||| ||| || | || | | || ||| |||||||| |||| || Sbjct 2594 CCCCAGCTGAAGCCAAATACCTTGAACCCGAAACAACACCAACGCCGCCAAGCCCATCAC 2653 Query 359 CACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGCGGTG 418 || ||| |||| ||| ||| |||| ||| |||||||| | |||| || Sbjct 2654 CAGCCCACTCAGCAACCAGTGCCCCTTCCAGGGCAGGGCGCCGAGCAAGGCCTGGCGTTG 2713 Query 419 CATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCGGCAG 478 |||||||| ||| ||| || ||||| | | || |||| | ||| |||| ||| Sbjct 2714 CATCAGCAGCAACGCCGTGCACAGCACGCCGGCGAGGGCGGCCAGCGGGATACCCGCCAG 2773 Query 479 GCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCGTTGACCAGGCTGCCCAGCAGTT 537 ||| | |||| | |||||||| |||||| |||| |||||||||||||||| | Sbjct 2774 GCCAAACACAA-ACGGCAGCACACCCAGCAGCAACACGTTCACCAGGCTGCCCAGCAACT 2832 Query 538 CGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCATCGCGT 597 ||||| |||||| |||| ||||||||| |||||||||||| || || |||| |||| Sbjct 2833 CGCAACGCAGCGGCTGGCGGGTGTCGCCGGCGGCATAGGCATAACGCGCCAGCAGGGCGT 2892 Query 598 TCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648 |||||||||| |||||||| ||| ||| ||||||||||||||| ||||| Sbjct 2893 TCCAGGCGCCGAACACCAGCGGCACGGCAAACCAGGCCAGCAGCAGCGGCA 2943 Score = 100 bits (110), Expect = 1e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| || ||||||| ||| |||| ||| |||| ||| ||||||||||| ||||| || Sbjct 1131 CGAGAAGACCGTGCCACCCGACACCCTCAGCCTGGCGGATTTCTTCAGCGCGATTGATCA 1190 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCC 108 |||||| ||||| |||||||| |||||||| || || || || ||||| Sbjct 1191 GATGCCCCAGGCTGAAAAGGACCTTGCCGCGCCGGCCGAACCTGAGCC 1238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2005584505617