Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq9892 224 2e-56 >seq9892 Length=17670 Score = 224 bits (248), Expect = 2e-56 Identities = 221/283 (78%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | |||| || | |||||||| | ||| | Sbjct 9468 CCCACGCTTTCGTGCCTCAGCGTCAGTACAAGACCAGTAAGCGGCCTTCGCTATTGGAAT 9527 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||| |||||| ||||||||||||||||| |||||| | || ||||| | || Sbjct 9528 TCCTCATGGTATCTATGCATTTCACCGCTACACCATGAATTCTGCTTACCTCTTCTTGAC 9587 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 ||||| | | |||| |||| ||| | ||| ||| ||| | | |||||| ||||| Sbjct 9588 TCAAGCACATCAGTATCAATGGCA-TTTCTGGCGTTAAGCGCCAGGCTTTCACCACTGAC 9646 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||||| | ||||||| ||||| |||||||||||||||||||| ||| | Sbjct 9647 TTAAAATGCCGCCTACGCACCCTTTAAACCCAGTAAATCCGGATAACGCTTGCACCCTCC 9706 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 9707 GTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 9749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828483553023