Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= AAMG01001951.1 Length=416 Score E Sequences producing significant alignments: (Bits) Value seq23142 556 3e-156 seq38734 168 2e-39 >seq23142 Length=8946 Score = 556 bits (616), Expect = 3e-156 Identities = 373/416 (90%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 1 TCCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGACA 60 |||| ||||| |||||||||| ||||||||| || || |||||||||||||||||||||| Sbjct 3826 TCCACCCCAATGCCATGACCCTGGTGGTGTTCGGTGATAACGGCGAGCTGCACCGCGACA 3885 Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGG 120 |||| ||||||||||| ||||| |||||||||||||||||||||||| | ||||| |||| Sbjct 3886 CCTACTACTCGGTGGGCGGCGGATTCGTGGTGGATGAAGCCCAGGCCAACAGCGGCGTGG 3945 Query 121 CGGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGCAGC 180 ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 3946 CGGACATGGACCGCACCGAGCTGCCCTATGATTTTTCCAGTGCGGTGGAACTGCTGCAGC 4005 Query 181 TGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCTGGC 240 ||||||||||||||||||||||||| || || |||||| ||||||| ||||||||||||| Sbjct 4006 TGTGCAAGACCCACAACCTGCGCGTCGCTGAGCTGATGTTGGCGAACGAAAAAACCTGGC 4065 Query 241 GCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCG 300 || ||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 4066 GCTCGGAAGAAGAAATCCGCAGCGGCCTGATGAAGCTTTGGCGCGCCATGCAGGATTGCG 4125 Query 301 TGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCGCG 360 ||||||| ||||| ||||||||||| ||||| ||||||||| | || || || || || | Sbjct 4126 TGGAGCAAGGCCTAAAGCACGAAGGCATCCTTCCCGGCGGCCTTAATGTTCGGCGGCGTG 4185 Query 361 CTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATCGGCTCG 416 | |||||||| ||||||||||||||||||||| |||||| || |||||||||||| Sbjct 4186 CAGCCAAGTTGCACCGCAGCTTGCAGGAGCTGGGCAAGCCGAACGTGATCGGCTCG 4241 >seq38734 Length=30485 Score = 168 bits (186), Expect = 2e-39 Identities = 287/411 (70%), Gaps = 4/411 (1%) Strand=Plus/Plus Query 2 CCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCG-ACA 60 ||| |||||||||||| ||| | | | |||||||||||| | | | || | | | Sbjct 14935 CCACCCCAACGCCATGTCCCTGCATGCCTACGGCGAAAACGGCCCGTTA-AGCGAGCAAA 14993 Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGG 120 | || ||||||||||| ||||||||| | | || | || | ||| | ||| | | Sbjct 14994 CGTACTACTCGGTGGGCGGCGGTTTCATCATCGAAGCGGCAGAAGCCGAGTCCGGCATCG 15053 Query 121 CGGACATGGACCGTACCG-AGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGCAG 179 || | || | | | | ||||||| || ||||| || ||||| || ||| || Sbjct 15054 CGCCTACCAAC-GAAGTGCAATTGCCCTACGACTTTTCGAGCGCCGTCGAACTGCTGGCC 15112 Query 180 CTGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCTGG 239 ||||||| | ||| |||||| ||| |||| |||||| |||| || || ||||| Sbjct 15113 TTGTGCAACAAGCACGGCCTGCGGGTTTCCGAGCTGATGATGGCCAACGAGCGGGCCTGG 15172 Query 240 CGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGC 299 |||||||| | || ||||||||||||||| || | ||||| | |||| || ||| Sbjct 15173 CGCAGCGATGCCGAGATCCGCAGCGGCCTGCTGCATATCTGGTCGGTGATGCGTGAATGC 15232 Query 300 GTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCGC 359 || || || ||||| |||||||| |||||||||||||| || | |||| || ||| Sbjct 15233 GTCGAACAAGGCCTGCGCCACGAAGGCATCCTGCCCGGCGGTCTGGATGTGCCACGGCGC 15292 Query 360 GCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATC 410 || || || || ||||||||| ||| ||| | ||| ||||| || ||| Sbjct 15293 GCCGCGAAATTGCACCGCAGCCTGCTGGAAATCGGCAAACCCAACGTCATC 15343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1228315693056