Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq37645 354 2e-95 seq2433 268 2e-69 seq16862 129 1e-27 >seq37645 Length=14051 Score = 354 bits (392), Expect = 2e-95 Identities = 308/381 (81%), Gaps = 1/381 (0%) Strand=Plus/Minus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || |||||||||| || ||||||||| | ||| ||| ||||| |||| | Sbjct 12433 AGGGCGAAGAAGTGCAGCAGGCGTTCGGCGTGCAGTTCACCGTGGCGCTCGCGGTAATCG 12374 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 || ||||||||| || | |||| || |||||||||||||| ||||||||||| ||||||| Sbjct 12373 TCGAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCATGCAGGCCATCGCCGCGCCCG 12314 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| |||||||||||| || ||||| || || ||||| || ||| Sbjct 12313 TCCTGGGGCATCAGCGACAGCGAATAACTGACATCGAGCATCCGCGCGAGGTTTTCCGCG 12254 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATA-CTCAG 241 ||||||||||| |||||||||||||||| ||| | || ||||||| || |||| ||| Sbjct 12253 CGCTCCAGGTAGCGCGACATCCAATACAAATCCGAGGCAGTTCTACTCAACATATTTCAA 12194 Query 242 CCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAG 301 |||| |||||||||||||| ||||| || ||||| || ||||||||||| ||||||||| Sbjct 12193 TCCTCGACCACCCAGGTGTCTTTGGTGCCGCCGCCCTGGGACGAGTTGACCACCAGCGAG 12134 Query 302 CCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAG 361 |||||| ||||||||| || |||| ||| |||||||||| |||||||||||||| Sbjct 12133 CCTTCCCGCAGCGCCACACGAGTCAGGCCGCCGGGCACCACACGGGTTTCCTTGCCTTGC 12074 Query 362 AGCACGAAGGGTCGCAAGTCG 382 | ||| || || |||| |||| Sbjct 12073 AACACAAACGGGCGCAGGTCG 12053 >seq2433 Length=1432 Score = 268 bits (296), Expect = 2e-69 Identities = 186/211 (88%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 1 CGAGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGC 60 |||| || |||||||||| |||||| ||||| ||||| ||| || ||||| ||||| | Sbjct 1222 CGAGGGCGAAGAAGTGCAGCATGCGCTCGGCGTCCAGTTGCTGATGGCGCTCAAGGTAAC 1281 Query 61 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCC 120 |||||||||||||||||||||||| |||||| |||| || ||||| || || ||||||| Sbjct 1282 TGTCCAGGGTGCCGCTGCTGAGCAGCGACATGGCCAACTCGTCCAGCCCGTCACTGCGCC 1341 Query 121 CGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGG 180 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1342 CGGCCTGGGGCATCAACGACAGCGAATAACTGACTTCCAGCATGCGCGCCAGGTTCTCGG 1401 Query 181 CGCGCTCCAGGTAACGCGACATCCAATACAG 211 | |||||||||||||| |||||||||||||| Sbjct 1402 CACGCTCCAGGTAACGGGACATCCAATACAG 1432 >seq16862 Length=1904 Score = 129 bits (142), Expect = 1e-27 Identities = 86/96 (90%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 287 TTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGG 346 ||||||| || |||||||| ||| |||||||||||||||||||| |||||||||||| Sbjct 1 TTGACGATCAATGAGCCTTCGCGCAGTGCCACGCGGGTCAAGCCACCCGGCACCAGGCGG 60 Query 347 GTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 ||||||||||||||||||||||| ||||||| |||| Sbjct 61 GTTTCCTTGCCCGAGAGCACGAACGGTCGCAGGTCG 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119558574400