Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq9892 306 1e-80 >seq9892 Length=17670 Score = 306 bits (338), Expect = 1e-80 Identities = 371/500 (74%), Gaps = 24/500 (5%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 || ||||| ||||||| ||||| ||| | || || || ||||| ||||| | | | Sbjct 10140 GACCGGCGAACGGGTGCGTAACACGTATGCAATCTACCTTGTACTGGAGGATAGCTTCCG 10081 Query 82 GAAA--GGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT 139 |||| || || |||||| ||| | |||| |||||| | | | |||| | Sbjct 10080 GAAACGGGAAT--TAATACTCCATATGCTCTTTTTGACGCATGTCATTAAGAGGAAAGTT 10023 Query 140 CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 ||||||||||| ||| | ||| | |||||||||||||||||||||||||||||||| Sbjct 10022 CCGGCGGTACAAGATGAGCATGCGCCCCATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 9963 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 ||||||||| |||| | |||||||| |||| ||||| ||| ||||||| |||| | Sbjct 9962 GGCGACGATGGGTAGGGGTTCTGAGAGGAAGATCCCCCACACTGGCACTGAGATACGGGC 9903 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319 || ||||||||||||||||||||| |||||||||| |||||||| |||||||| ||| Sbjct 9902 CAGACTCCTACGGGAGGCAGCAGTAGGGAATATTGGTCAATGGGCGCAAGCCTGAACCAG 9843 Query 320 CAACGCCGCGTGAGCGATGAAGGCCTTC-GGGTCGTAAA--GC-TCTGTCC----TCAA- 370 | | |||||||| |||||||||| || |||| ||||| || | ||| | ||| Sbjct 9842 CCATGCCGCGTGCAGGATGAAGGCCCTCAGGGTTGTAAACTGCTTTTGTACGAGAACAAA 9783 Query 371 ----------GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCA 420 || | | ||| ||| | || |||| |||||||||| ||||||| Sbjct 9782 AAGCGCCTGCGGGCGTCATTGAGTGTATCGTAAGAATAAGCACCGGCTAACTCCGTGCCA 9723 Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTG 480 ||||||||||||||||| |||| || ||||||||||||| ||||| ||| ||||||||| Sbjct 9722 GCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTACT-GGGTTTAAAGGGTG 9664 Query 481 CGTAGGTGGTTTCTTAAGTC 500 |||||| || | ||||||| Sbjct 9663 CGTAGGCGGCATTTTAAGTC 9644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497009750912