Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euglena_20gracilis_20var._20bacillaris_20[genbank_20GCA_5F001638955. 1_202016-05-06] 105,159 sequences; 41,195,790 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq49 329 1e-87 >seq49 Length=10043 Score = 329 bits (364), Expect = 1e-87 Identities = 244/285 (86%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||| || | || || || |||| || ||||||||||| ||||| Sbjct 8388 CTCCCACCTATGCTACGCCCCACATGTTGTTGCACAGTATCAAACTAGAGTCAAACTCAA 8329 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||| | |||||||||||||||||| ||| | ||| | || Sbjct 8328 CAGGGTCTTCTTTCCCCGCTGACACATCCAAGCCCGTTCCCTTGGTTGTTGGTTCACCAG 8269 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | || ||||||||| ||||||||||| |||||||||||||||||| ||||| | || Sbjct 8268 ACAGCGACTAGGGACAGCAGGAATCTCGTTGATCCATTCATGCGCGTCAATAATTGGTTG 8209 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8208 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 8149 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||| ||||| | |||||| |||||||||||||||||| |||| Sbjct 8148 CTGAATCTCTTCGCATTGACAATCAGAGCACTGGGCAGAAGTCAC 8104 Score = 78.8 bits (86), Expect = 3e-12 Identities = 71/88 (81%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTT-AGGACACCTGCGTTATGGTTTAACAGATG 78 ||||||||||||||| | |||| ||| ||||| ||| |||| || | ||| || | Sbjct 8832 GGAGATTTCTGTTCTGCCTGAGCAATGCTTCAGGACGCCTTCGTTGTGTTGTAAAAGGCG 8773 Query 79 TGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||||||| |||| Sbjct 8772 TGCCGCCCCAGCCAAACTCCCCAACTGA 8745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633480440032