Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4698 131 7e-28 >seq4698 Length=3376 Score = 131 bits (144), Expect = 7e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||| ||| | ||||| ||||||||||| |||||||||||||||||| | ||||| Sbjct 2675 TTGAGTTGGAGTGTGCCTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGA 2616 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| | |||||| | ||||||||| | |||| | ||| ||||||||||| |||| | Sbjct 2615 AGCCCGGGGAAACCCAGGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGTATGA 2556 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||| || |||| Sbjct 2555 TTTGGGTATCGGAGCGA 2539 Score = 116 bits (128), Expect = 2e-23 Identities = 113/142 (80%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||||||||||||||| || | ||| ||||| | ||| |||||| |||||| | | Sbjct 3184 TGTTTGGGAATGCAGTGTCAAGCTGGCAGGTATTTGTCTGCTAAAGTTAAATACAGAGTA 3125 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 3124 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 3065 Query 165 GTTAAAAAGCACGTGAAATTGT 186 || | | || || |||||| || Sbjct 3064 GTGACATAGAACCTGAAATCGT 3043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079779837200