Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6703 248 7e-61 seq1748 242 3e-59 >seq6703 Length=6023 Score = 248 bits (274), Expect = 7e-61 Identities = 525/775 (68%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||||||||| || || | || ||||||||||| || || |||| || || | || Sbjct 4363 ACAAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTG 4422 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| ||| || |||||||| || ||| ||||| || | |||| || || Sbjct 4423 TACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTC 4482 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||| ||||| || |||||||| | |||| |||| ||| ||||| | |||||| Sbjct 4483 GACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGAC 4542 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 || | ||||||| ||| || | | |||| ||||| | || ||| | ||| Sbjct 4543 TCGAGGATGGCGAACCACAGCTCCTGCGCCTGGACCGTCTGGAC-GCCGAGGCCGCGCGC 4601 Query 66233 -TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 ||||| | ||||| ||| | || || || || | | ||| || | || || Sbjct 4602 CTCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCA 4661 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATC-CTGTTCTACACGACGCATAAATAGAT 66350 | | || |||||||| ||| | || || || | || || ||||| || || | Sbjct 4662 GGTCTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCATG-ACGCGGCGCATGAACAGGT 4720 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410 | || ||||||||| |||||||||| ||||| || || || ||||| |||| | | | Sbjct 4721 CGGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCC---AGTGT 4777 Query 66411 TGCGCA--AGTCG-AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 ||||| || | ||||| | ||||||||||| ||||| || || ||||| | ||||| Sbjct 4778 TGCGCTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGA 4837 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 | | |||| | || || ||||| || || || |||||||| ||| || || | || | Sbjct 4838 AGGCGCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCC 4897 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTG 66587 ||| |||||| ||||| ||||| || |||| ||||||||| ||||| | || | Sbjct 4898 GCAGCATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAG 4957 Query 66588 CCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT 66647 | || || | |||||| | || || || || || || | ||| ||| || || | Sbjct 4958 CGCGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACT 5017 Query 66648 CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | | || | | |||||||| ||| ||| |||| || | | |||| |||| | Sbjct 5018 CCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACG 5077 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT 66762 | || | || || ||||| ||| |||| |||||| || || || ||||| || Sbjct 5078 AGCTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGT 5132 >seq1748 Length=1330 Score = 242 bits (268), Expect = 3e-59 Identities = 614/916 (67%), Gaps = 21/916 (2%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || |||| || || || || ||||| ||||||| ||| |||| | | Sbjct 980 ATGAGCCGCTGCTGCAGGACAACCCCTACCGGTTCGTGCTGTTCCCGATCCAGTACCACG 921 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 | || ||||||| |||||| || ||| |||| | | ||||||| |||||||| |||| Sbjct 920 ACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGAC 862 Query 61144 TTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||| |||||| |||||||| | | | | ||| ||| || | || ||||| || Sbjct 861 CTGGGCAACGACATGGCTGACTGGGTGAAGCTGAACGA-CGGCGAGCGGCACTTCATCAA 803 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || ||| |||| ||||| || | ||||| ||||| ||||| | | || Sbjct 802 GCACGTGCTGGCCTTCTTCGCGGGGAGCGACGGCATCGTGGTGGAGAACCTGGCGCTGCG 743 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | || ||| | ||| |||||||||| |||||||| |||||| | || Sbjct 742 GTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGAT 683 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGG 61380 |||||| |||||||||||| |||| || || | || |||||||||| || |||| Sbjct 682 GGAGAACATCCACTCGGAGACGTACTCCGTGCTGCTGGACACGTACATCACGGACAGCGA 623 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | ||| || || || | | || ||| ||||||| ||| | || ||| || Sbjct 622 GGAGAAGCTGCAC--CTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGGAGAAGGCC 565 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 || ||||| | |||||| || | | ||| | || || || || | | Sbjct 564 GAGTGGGCGCTGCGGTGGATCGGGAG--CGA-GGCGAGCTTCCAGGAGCGCCTGATCGGG 508 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 || || | ||| ||||| | || ||| ||| ||||| ||| | || ||| ||||| Sbjct 507 TTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 448 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || | |||||||||||||| |||||||| ||| | || || ||||||||||| Sbjct 447 AAGCGCGGCGTGATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGG 388 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||| || ||||| |||| | ||| || | | | | || | | || Sbjct 387 CTGCACACGGACTTTGCGTGCCTGCTGTACAACAGCCACATCAAGCACCGGCTGCCGCGC 328 Query 61681 GAGCGTGTGGGTGAGATTGT-TCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACT 61737 | ||| ||| ||||| | ||| ||||| || ||||| || || || |||| Sbjct 327 GCGCGCGTGCTGGAGATCATCACGT-CCGCGGTGACCATCGAGCACGAGTTCATCTG--C 271 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 ||||| |||| || || ||||| ||||| | || ||| ||||||| ||||| Sbjct 270 GACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCGCAGTACATTGAG 211 Query 61798 TTTGTTGCCGACCGTCTG-TTG-GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 ||||| || ||||| ||| ||| |||| |||| | || | ||| || ||| | Sbjct 210 TTTGTGGCGGACCGCCTGCTTGTGTCG--CTGGGCGAGGAGAAGTACTACAACTCGACGA 153 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||| || || |||||||| ||||| |||||| | ||||||||||| || |||||||| Sbjct 152 ACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGA 93 Query 61916 GTGTAGGCGACTATCA 61931 || ||||| || || Sbjct 92 AGGTCGGCGAGTACCA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397518267224960