Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1681 262 3e-65 seq157 208 6e-49 >seq1681 Length=36401 Score = 262 bits (290), Expect = 3e-65 Identities = 518/758 (68%), Gaps = 10/758 (1%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| || || |||| | || | || |||||||||||||| ||||| Sbjct 1444 GAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATTTCCGTGCAT 1503 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || ||||| | ||||| || || ||||| |||||||| ||| Sbjct 1504 AGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCC 1563 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | ||| |||| || ||||| | || ||||| | |||||| ||| | Sbjct 1564 TTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAACCACACC 1623 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | | |||| | ||| | | |||| | || | | ||||| | |||||||| | Sbjct 1624 TCCTGGGCCTGGATCGT-CTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCG 1682 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 || || ||||| | ||| |||| || ||| ||| ||| |||||||| Sbjct 1683 CTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGATCCATCAGCGT 1742 Query 66313 CCAATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||| | || || || ||| ||||| | |||||| ||||| || ||||| || ||||||| Sbjct 1743 CCACTTTCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGA 1801 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT--TTTGCGCAAGTCGAGGAACT 66428 |||| ||||| || || || || || | || ||| | ||| ||| || || Sbjct 1802 AGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGC 1858 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 ||||||||||||||||||| || || || |||| |||||| | |||| | || || |||| Sbjct 1859 CAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACCGC 1918 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || ||||| |||||||| ||| ||||||||||| || | ||| || |||||||||| Sbjct 1919 CGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGT 1978 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 | || |||| |||||||| | ||| | || || || |||| ||| || | || Sbjct 1979 TCGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCA 2038 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 ||||||| || ||||| | || ||| | ||||| || | || | | |||| Sbjct 2039 GACCAATGCCGCCGGCTGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGC 2098 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 |||| ||| ||| |||| | || ||| |||| || || | ||| || || || | Sbjct 2099 CGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTTGGGG 2158 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || |||| |||||||| || || ||||| || ||| Sbjct 2159 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAG 2196 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||||||| ||| ||||| ||||| |||||||| || |||| ||| || ||| | | Sbjct 875 GGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTTGAGGTGAAGGGCTCGAAGCACT 934 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| ||||| || | ||||| || ||||||||||| || |||| || ||||| Sbjct 935 CGTTGTTGCCGAGAATCTGCGAGGTAGACGCGGTTGGCATGGGGGCAACCAGCAGTGAGT 994 Query 65553 TTCGCA 65558 | |||| Sbjct 995 TGCGCA 1000 >seq157 Length=1104 Score = 208 bits (230), Expect = 6e-49 Identities = 588/885 (66%), Gaps = 21/885 (2%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || | ||| | ||||| ||| |||| | || || ||||||| Sbjct 1009 GCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGACATCTGGCGCAA 950 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| || ||| |||| Sbjct 949 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTGGGCAACGACA 891 Query 61157 TGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | || | | ||| ||| || | || ||||| || || ||| | || Sbjct 890 TGAAGGACTGGGCGGCGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 832 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| || ||| |||||| | | | || ||| | || Sbjct 831 TTCTTCGCCGGCAGCGACGGCATAGTCGTCGAGAATCTTGCGCAGCGCTTCATGAGCGAT 772 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| | |||||||| |||||||| |||||| | |||||||| ||||| Sbjct 771 GTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCAC 712 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAAC 61393 ||||||| |||| ||| || | || |||||||||| || |||| | ||| || | Sbjct 711 TCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 654 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || || ||||||| ||| | || |||| ||||| |||||| | Sbjct 653 GGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAGGAAGGCGGAGTGGGCCGTGC 594 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || || | || | ||| || || || | | || || | ||| | Sbjct 593 GGTGGATCGGGAG--CAGC-GCGAGCTTTCAGGAGCGGCTGATAGGCTTCGCTGCGGTGG 537 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | || | || || || ||||| ||| | || ||| ||||||| || || || | Sbjct 536 AAGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGA 477 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| | || || ||||||||||| | || || | Sbjct 476 TGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACT 417 Query 61634 TTGCTGTTTTGCTATTCAA-ACGC-TATC-TGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 | || |||| | ||| ||| ||| | || | ||| || ||||| ||| Sbjct 416 TCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAACTGCCG-CG--CGAGCGCGTGC 360 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCC 61748 ||||| || || ||||| | ||||| | || || |||| |||||| |||| Sbjct 359 TGGAGATCATTGTGGATGCGGTGAACATCGAGCGAGAGTTCATCTG--TGACGCGCTGCC 302 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || || |||||||| | || ||| ||||||| || || || || || || Sbjct 301 GGTGCGGCTGATTGGCATGAACGCAGAGCTCATGGCGCAGTACATCGAGTTCGTCGCGGA 242 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 ||| ||| | || | || | || | ||| || ||| | || || || || Sbjct 241 CCGGCTGCTTGTATCGCTCGGCGAGGAGAAGCACTACAACTCGACGCAGCCGTTCGACTT 182 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 |||||| ||||| |||||| | ||||||||||| || || ||||| Sbjct 181 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555271239280