Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28 235 4e-57 seq22 217 1e-51 seq27 154 1e-32 >seq28 Length=1171705 Score = 235 bits (260), Expect = 4e-57 Identities = 512/758 (68%), Gaps = 10/758 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| || || |||| | || | || ||||||||||| || ||||| Sbjct 331355 GAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGTGCAT 331296 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || ||||| | ||||| || || ||||| |||||||| ||| Sbjct 331295 AGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCC 331236 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | | | |||| || ||||| | || ||||| | ||| || ||| | Sbjct 331235 TTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCACACC 331176 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | | |||| | ||| | | |||| | || | | ||||| | |||||||| | Sbjct 331175 TCCTGGGCCTGGATCGT-CTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCG 331117 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 || || |||||| | ||| |||| || ||| ||| ||| |||||||| Sbjct 331116 CTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGT 331057 Query 66313 CCAATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||| | || || || ||| ||||| | |||||| ||||| || ||||| || ||||||| Sbjct 331056 CCACTTCCCCTCGCTTTTC-ACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGA 330998 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT--TTTGCGCAAGTCGAGGAACT 66428 |||| ||||| || || || || || | || ||| | ||| ||| || || Sbjct 330997 AGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGC 330941 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||||| ||| || ||||| || || || |||| |||||| | |||| | || || |||| Sbjct 330940 CAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGC 330881 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || ||||| |||||||| ||| ||||||||||| || | ||| || |||||||||| Sbjct 330880 CGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGT 330821 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 | || |||| || || || | ||| | || || || || | ||| || | || Sbjct 330820 TCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCA 330761 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 ||||||| || ||||||| || ||| | ||||| || || || | | |||| Sbjct 330760 GACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330701 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 |||| ||| ||| |||| | || ||| |||| || || | ||| || || || | Sbjct 330700 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330641 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || |||| |||||||| || || ||||| || ||| Sbjct 330640 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAG 330603 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||||||| ||| ||||| ||||| |||||||| || |||| ||| || ||| | | Sbjct 331924 GGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACT 331865 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | | ||||| ||||| || | || || || ||||||||||| || |||| || |||| Sbjct 331864 CGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGT 331805 Query 65553 TTCGCA 65558 | |||| Sbjct 331804 TGCGCA 331799 >seq22 Length=704707 Score = 217 bits (240), Expect = 1e-51 Identities = 594/887 (67%), Gaps = 25/887 (3%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || | || | ||| | ||||| ||| |||| | || || ||||||| Sbjct 499914 GCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGACATCTGGCGCAA 499855 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| || ||| |||| Sbjct 499854 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTGGGCAACGACA 499796 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 499795 TGAAGGACTGGGCAAYGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 499737 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| || |||| |||||| | | | || ||| | || Sbjct 499736 TTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGAC 499677 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| | |||||||| |||||||| |||||| | |||||||| ||||| Sbjct 499676 GTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCAC 499617 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAAC 61393 ||||||| |||| ||| || | || |||||||||| || |||| | ||| || | Sbjct 499616 TCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 499559 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 || |||| | || || ||||||| ||| | | ||| ||||| ||||| | Sbjct 499558 GACTGTTGCACGCAATACAGACGATCCCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGC 499499 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || || | || | ||| || || || | | ||||| | ||| | Sbjct 499498 GGTGGATCGGGAG--CAGC-GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGG 499442 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || || || ||||| ||| | || ||| ||||||| || || || | Sbjct 499441 AGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGA 499382 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| | || || |||||||||||| | || || | Sbjct 499381 TGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACT 499322 Query 61634 TTGCTGTTTTGCTATTCAA-ACGC-TATC-TGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 | || |||| | ||| ||| ||| | || | ||| || ||||| ||| Sbjct 499321 TCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCG-CG--CGAGCGCGTGC 499265 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 |||| | |||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 499264 TGGAGA-TCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTG--CGACGCGCTGC 499208 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGA-CTAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || || || |||||||| | ||| || ||| ||||||| || || || || || Sbjct 499207 CGGTGCGGCTGATTGGCATGAA-CGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCG 499149 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| |||| | || | || | ||| ||| | || || || Sbjct 499148 GACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCGTTCGAC 499089 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 |||||||| ||||| |||||| | ||||| ||||| || |||||||| Sbjct 499088 TTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAA 499042 Score = 118 bits (130), Expect = 8e-22 Identities = 205/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || | || | ||| | ||||| ||| |||| | || || ||||||| Sbjct 500370 GCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGACATCTGGCGCAA 500311 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| || ||| |||| Sbjct 500310 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTGGGCAACGACA 500252 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 500251 TGAAGGACTGGGCAATGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 500193 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| || |||| |||||| | | | || ||| | || Sbjct 500192 TTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGAC 500133 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAA 61328 ||| | ||| | |||||||| |||||||| |||||| | |||||||| Sbjct 500132 GTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAA 500080 >seq27 Length=1024085 Score = 154 bits (170), Expect = 1e-32 Identities = 242/341 (71%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || | ||| | ||||| ||| |||| | || || ||||||| Sbjct 811507 GCAGGAGAACCCATTCCGCTACGTCCTCTTCCCAATCCAGTACCATGACATCTGGCGCAA 811448 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| || ||| |||| Sbjct 811447 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTGGGCAACGACA 811389 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | || | | ||| ||| || | || ||||| || || ||| | || Sbjct 811388 TGAAGGACTGGGCAACGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 811330 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| || |||| |||||| | | | || ||| | || Sbjct 811329 TTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGAC 811270 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| | |||||||| |||||||| |||||| | |||||||| ||||| Sbjct 811269 GTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCAC 811210 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| |||| ||| || | || |||||||||| ||| Sbjct 811209 TCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGA 811169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567825567040