Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28 235 4e-57 seq22 118 8e-22 >seq28 Length=1168530 Score = 235 bits (260), Expect = 4e-57 Identities = 512/758 (68%), Gaps = 10/758 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| || || |||| | || | || ||||||||||| || ||||| Sbjct 331294 GAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGTGCAT 331235 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || ||||| | ||||| || || ||||| |||||||| ||| Sbjct 331234 AGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCC 331175 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | | | |||| || ||||| | || ||||| | ||| || ||| | Sbjct 331174 TTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCACACC 331115 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | | |||| | ||| | | |||| | || | | ||||| | |||||||| | Sbjct 331114 TCCTGGGCCTGGATCGT-CTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCG 331056 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 || || |||||| | ||| |||| || ||| ||| ||| |||||||| Sbjct 331055 CTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGT 330996 Query 66313 CCAATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||| | || || || ||| ||||| | |||||| ||||| || ||||| || ||||||| Sbjct 330995 CCACTTCCCCTCGCTTTTC-ACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGA 330937 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT--TTTGCGCAAGTCGAGGAACT 66428 |||| ||||| || || || || || | || ||| | ||| ||| || || Sbjct 330936 AGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGC 330880 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||||| ||| || ||||| || || || |||| |||||| | |||| | || || |||| Sbjct 330879 CAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGC 330820 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || ||||| |||||||| ||| ||||||||||| || | ||| || |||||||||| Sbjct 330819 CGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGT 330760 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 | || |||| || || || | ||| | || || || || | ||| || | || Sbjct 330759 TCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCA 330700 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 ||||||| || ||||||| || ||| | ||||| || || || | | |||| Sbjct 330699 GACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330640 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 |||| ||| ||| |||| | || ||| |||| || || | ||| || || || | Sbjct 330639 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330580 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || |||| |||||||| || || ||||| || ||| Sbjct 330579 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAG 330542 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||||||| ||| ||||| ||||| |||||||| || |||| ||| || ||| | | Sbjct 331863 GGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACT 331804 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | | ||||| ||||| || | || || || ||||||||||| || |||| || |||| Sbjct 331803 CGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGT 331744 Query 65553 TTCGCA 65558 | |||| Sbjct 331743 TGCGCA 331738 >seq22 Length=675415 Score = 118 bits (130), Expect = 8e-22 Identities = 205/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || | || | ||| | ||||| ||| |||| | || || ||||||| Sbjct 514833 GCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGACATCTGGCGCAA 514774 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| || ||| |||| Sbjct 514773 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTGGGCAACGACA 514715 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 514714 TGAAGGACTGGGCAATGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 514656 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| || |||| |||||| | | | || ||| | || Sbjct 514655 TTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGAC 514596 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAA 61328 ||| | ||| | |||||||| |||||||| |||||| | |||||||| Sbjct 514595 GTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAA 514543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567825567040