Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28 239 4e-58 >seq28 Length=1152636 Score = 239 bits (264), Expect = 4e-58 Identities = 892/1377 (65%), Gaps = 40/1377 (3%) Strand=Plus/Minus Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||||||| ||| ||||| ||||| || || || || |||| |||||| || | | Sbjct 316678 GGAACTCGCCGCTCAGCACACGGCGGACGTATATATTCGAGGTGAAGGGTTCGAAACACT 316619 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| ||||| || | || || || ||||||||||| | |||| || ||||| Sbjct 316618 CGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGACACCAGCAGTGAGT 316559 Query 65553 TTCGCAATCCG---TTCATTTCAATGT-TGTGACGCAATTCGTCCCAGTTCCA-CATCGG 65607 | || | || | ||| | | | | ||| || | |||||| ||| | | | Sbjct 316558 TGCGTATGCCTACCTGCATGACCTTCTCTTTGAGGCT----GGCCCAGTCCCAGCGACCG 316503 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | ||| | | | ||||||||| ||||| | || || ||||| Sbjct 316502 CTGTTCGGCCGCGCGTTCTT-CCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCT 316444 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTG 65726 | ||| | | |||| |||||||||||| || || | || | | ||||| | Sbjct 316443 GTCCTTGAAGGTCTTGTACGGTCCCTCCTCCTTTGCGAGCTC-CATCGACGACTCGACCG 316385 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCG-ATTAAGTTCACGTGCCTCATCGCTCTCG 65785 |||| || || ||||||||||| || | || ||| | | ||||| | || Sbjct 316384 CGGCGAAGTAGATGGTCTCGAAGAT-CTCCGCATTCACCCGCTGCGCCTCCGCCGAGACG 316326 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 |||||| | ||| |||| ||| ||||| || || || || || |||| |||||||||| Sbjct 316325 AACGGCAGTCGCATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGA 316266 Query 65846 CGATGACGCAAATTGGAACGTCTCGCC-TCAGGTACAGGGTAGTAATTGATATCGATAAT 65904 || | |||| ||| || | ||| || | || |||||||| ||| || |||| Sbjct 316265 CGGTTGCGCATGTTGCTGCGGCGCGCTGTCTCG-ACTGGGTAGTAGTTGCGGTCAATAAC 316207 Query 65905 GCGATTCAAATTGCGTGTCACCACATGCA-CGATACGTCGCAATTGTTCGAAATCAAAAT 65963 || || | ||||| || | | ||| || ||| || | || | | Sbjct 316206 ACGGTTTAGGTTGCGCGTGATC---TGCTTCGTCACGGCGTA-------GAGAAGCTGGT 316157 Query 65964 GTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGT 66023 | || | || ||| | | | | || || || || || | || ||||||| Sbjct 316156 GGTT-GAAC--TCGCGCTTTTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAGGT 316100 Query 66024 TGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGC 66083 |||| || || |||| || || | || |||||||||||||| |||||||| || || Sbjct 316099 TGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGC 316040 Query 66084 AGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCA 66143 | || || || | |||| || || ||||| ||||||||||||||||||| | Sbjct 316039 ACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCATCCTTGTACAGGA 315980 Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203 || | || ||| ||||| | || ||||| | |||||| ||| | | | |||| Sbjct 315979 TGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAACCACACCTCCTGCGCCT 315920 Query 66204 TCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | ||| || | | |||| ||||| | |||||||| | ||||| | | Sbjct 315919 GGATCGTCTTGACACCGCGGCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCT 315860 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 | || ||| || | || ||| ||| || |||||||| ||| || | Sbjct 315859 CGCCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTCCATCAGCGTCCACCGCCCCT 315800 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 | || ||||| ||| || | || || ||||| | ||||||||||| || || | Sbjct 315799 CACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGG 315740 Query 66384 CTCGTTGCTCCTCAATGCC-GTGATTT--TTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | || || || || |||| ||| | || |||| ||||| |||||| |||| Sbjct 315739 CGCGCTGGTCATCCTTGCCCGTGTTGCGCTTCAGCAAC---AGGAAACCAAAGACATCGG 315683 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 ||||||| || || || |||| |||||| | |||| | || || ||||| || ||||| | Sbjct 315682 CATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTA 315623 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 ||||||| || ||||||||||| |||| ||| |||||||| ||||| || |||| | Sbjct 315622 CGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGT 315563 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 |||| || | ||| | || || || || | ||| |||| ||||||||| || | Sbjct 315562 TGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAGACCAATGCCGC 315503 Query 66621 CGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGT 66680 |||||| ||| ||| | || || || || || | | |||||||| ||| || Sbjct 315502 CGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGT 315443 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 | |||| | || ||| |||| || || | ||| || || || ||| | || || Sbjct 315442 CGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTGA 315383 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA--GACATGTAATTGTACGTCTC 66795 ||||||| || || ||||| || || || | | | ||||| |||||||||||| Sbjct 315382 AGAGGGTTGGAGTGGCGTGGGTGAA--AAAGCCCATCGACATCAGATTGTACGTCTC 315328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567830412400