Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20sp._20MAR_20LEM2494_20[genbank_20GCA_5F000409445.2_2020 16-05-17] 251 sequences; 30,813,970 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28 248 7e-61 seq27 210 2e-49 seq22 205 7e-48 >seq28 Length=1158465 Score = 248 bits (274), Expect = 7e-61 Identities = 878/1348 (65%), Gaps = 44/1348 (3%) Strand=Plus/Minus Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 ||||||||| ||| ||||| ||||| || ||||| ||||| | |||||| ||| | || Sbjct 335641 AACTCGCCGCTCAGCACACGGCGGACGTAAATGTTCGACGTAAAGGGTTCGAAGCACTCG 335582 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| ||||| || | ||| || || ||||||||||| || || | |||||||| Sbjct 335581 TTGTTGCCGAGAATCTGTGAAGTGGACGCGGTTGGCATGGGGGCCACTAGTAATGAGTTG 335522 Query 65555 CGCAATCCG---TTCATTTCAATGTTGT-GACGCAATTCGTCCCAGTTCCA-CATCGGTT 65609 || | ||| | ||| | | | | || || | |||||| ||| | | | | Sbjct 335521 CGTAGGCCGACCTGCATCACCTTCTCCTTGAGGCT----GGCCCAGTCCCAGCGGCCGCT 335466 Query 65610 TATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 ||| ||| | | |||||| || ||||| | || || ||||| Sbjct 335465 GTTCGGTCGCC--CGTTCTTCCACATGTCAAACTGCAGAATGCCCTCGCTCGCCGGGCTG 335408 Query 65669 CCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTGC 65727 || || | || ||| ||||||||||| || || | || | | ||||| ||| Sbjct 335407 CCCTTAAAGGTCTCATACGGGCCCTCCTCCTTCGCTAGCTC-CATCGATGACTCGACTGC 335349 Query 65728 GGCAAAATAAATGGTCTCGAAAATG-CGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 ||| || || ||||||||||| || | || |||| || | || || | | Sbjct 335348 GGCGAAGTAGATGGTCTCGAAGATTTCCACGTTTAACCTCT-GCGCTTCCGCCGAGACAA 335290 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 |||||| || ||| |||| || ||||| || || || || || |||| |||| ||| | Sbjct 335289 ACGGCAGACGCATGAGGATGAAGGTGTCAGCGAGGCCCTGCACCCCAAGGCCGACGGGGC 335230 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 | | |||| ||| || | |||| | || ||||| || ||| || |||| | Sbjct 335229 GGTTGCGCATGTTGCTGCGGCGCGCCGCTTCGACCGGGTAATAGTTGCGGTCAATAACAC 335170 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTT 65966 | |||| |||||| || | | ||| | ||| || | | || | || | Sbjct 335169 GGTTCAGATTGCGCGTGATC---TGC----TTTGTCACAGTG--TAGAGAAGCTGGTGGT 335119 Query 65967 TAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 | | || ||| | | | | || || ||| || || | || |||||||| | Sbjct 335118 T-GAAC--TCGCGCTTCTCAACGTCGACGAAGCGGGGCAGCGCGATGGACGCGAGGTTAC 335062 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | || || |||| || || | || ||||||||||| ||||||||||| || ||| Sbjct 335061 ACACCGCCGTCTCCTCTGGCGACGTGTACTCGACAATCTCGGTGCACAGGTTTGAGCACT 335002 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 || ||||| | |||| || || ||||| || || ||||||||||||| ||| Sbjct 335001 TGATCGTGCCGAGGTTCTTCTGGTTTGACTTGCTGTTACACGCATCCTTGTACAGGATGA 334942 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA 66206 |||| ||| ||||| | || ||||| | |||||| ||| | | | |||| | Sbjct 334941 ACGGCCCGCCTGTCTCGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGCGCCTGAA 334882 Query 66207 CCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA 66265 ||| | | |||| | || | ||||| | |||||||| | ||||| | || Sbjct 334881 TCGT-CTTCACGCCGCGGCCCTCAGACTCGTAGCGCTCGTAGAGTCGCTCGAACGCCTCG 334823 Query 66266 CCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC- 66324 || | ||| || | || || ||| || |||||||| ||| | || || Sbjct 334822 CCATAGCAGTCGCTGAGGCCCGGGCATGTGTTGGGGTCCATCAGCGTCCACTTCCCCTCG 334763 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 | ||| ||||| ||| || | ||| || | ||| || ||||||||||| ||||| || Sbjct 334762 CCCTTC-ACACGCTTCATGAACAAATCTGGGACCCACAGAGCGTAGAAGAGGTCGCGAGC 334704 Query 66385 TCGTTGCTCCTCAATGCC-GTGATTTTTGCGC-----AAGTCGAGGAACTCAAAGATGTC 66438 || || || || |||| ||| || ||| |||| | |||| | |||| || Sbjct 334703 GCGCTGGTCATCTTTGCCCGTG----TTACGCTTTAAAAGT--AAGAACCCGAAGACATC 334650 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||| ||||| || || ||||| | |||||| | ||| | || || |||||||| ||||| Sbjct 334649 GGCGTGCCACGGCTCAAGGTACACGGCGAAGGCACCCTTGCGCTTACCGCCACCCTGGTC 334590 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 |||||||| ||| ||||||||||| |||| ||||||||| |||||||| || | || Sbjct 334589 CACGTAGCGGGCGGTGTTGTTGAAGACGCGCAGCATCGGTACCAGCCCGTTCGACGTACC 334530 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 |||||| ||| ||||| || || || || | ||| || | ||| || || || Sbjct 334529 ATTGGTCCCGGCGATGTAACTACCAGCGGCACGGATGTTGTGCACGTGCAGGCCGATGCC 334470 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGA 66678 |||||||| ||| ||| | ||||| || || || | | |||||||| ||| Sbjct 334469 ACCGGCCGCCTTACTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCT 334410 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| | || || |||| || || | ||| || || || ||| | || Sbjct 334409 GTCGTCCTTCGACGCCACCAGAAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCTGCGTT 334350 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 ||||||||| || || ||||| || ||| Sbjct 334349 GAAGAGGGTCGGAGTGGCGTGTGTGAAG 334322 >seq27 Length=1026784 Score = 210 bits (232), Expect = 2e-49 Identities = 599/903 (66%), Gaps = 21/903 (2%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| |||||||| || | ||| | ||||| ||| ||||| | || || ||||||| Sbjct 859525 GCAGGAGAATCCGTTCCGCTACGTCCTCTTCCCGATCCAGTATCATGACATCTGGCGCAA 859466 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| | ||| |||| Sbjct 859465 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTCGGCAACGACA 859407 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| ||| | | ||| ||| || | || ||||| || || ||| | || Sbjct 859406 TGAAGGACTGGGTGGCGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTCGCC 859348 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| |||||| ||||| | | | || || | || Sbjct 859347 TTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAACCTCGCGCAGCGCTTTATGAGCGAC 859288 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || | ||| |||||||||| ||||| || |||||| | |||||||| | ||| Sbjct 859287 GTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGGAGAACATTCAC 859228 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| || |||| | ||| || | Sbjct 859227 TCCGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGTTG--C 859170 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || || ||||||| ||| | ||| ||| || || ||||| | Sbjct 859169 GGCTGCTGCACGCGATTCAGACGATCCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTAC 859110 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| || || | || | ||| || ||| || | || ||||| | ||| | Sbjct 859109 GGTGGATTGGGAG--CAGC-GCGAGCTTTCAGGAGCGACTGATTGCGTTTGCCGCGGTGG 859053 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || || || ||||| || | || ||| ||||||| ||||| || | Sbjct 859052 AGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGA 858993 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| | || || || ||||| ||| |||| || | Sbjct 858992 TGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACT 858933 Query 61634 TTGCTGTTTTGCTATTCAA-ACGC-TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 | || | || | | ||| ||| ||| || | | | || ||||| ||| Sbjct 858932 TCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCG--CGAGCGCGTGCT 858875 Query 61692 TGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCC 61748 |||| | |||| || ||||| | ||||| | || || |||| ||||| |||| Sbjct 858874 GGAGA-TCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTG--CGACGCGCTGCC 858818 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || ||||||||||| | | | ||| | ||||| || || || || || || Sbjct 858817 GGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGA 858758 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 ||| ||| | || | ||| | || | ||| || ||| | |||||||| || Sbjct 858757 CCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGACTT 858698 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| || Sbjct 858697 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 858638 Query 61929 TCA 61931 || Sbjct 858637 CCA 858635 >seq22 Length=633148 Score = 205 bits (226), Expect = 7e-48 Identities = 598/903 (66%), Gaps = 21/903 (2%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| |||||||| || | ||| | ||||| ||| ||||| | || || ||||||| Sbjct 480957 GCAGGAGAATCCGTTCCGCTACGTCCTCTTCCCGATCCAGTATCATGACATCTGGCGCAA 480898 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| | ||| |||| Sbjct 480897 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTCGGCAACGACA 480839 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| ||| | | ||| ||| || | || ||||| || || ||| | || Sbjct 480838 TGAAGGACTGGGTGGCGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTCGCC 480780 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| |||||| ||||| | | || || | || Sbjct 480779 TTCTTCGCCGGCAGTGACGGCATCGTCGTCGAGAACCTCGCACAGCGCTTTATGAGCGAC 480720 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || | ||| |||||||||| ||||| || |||||| | |||||||| | ||| Sbjct 480719 GTAAAGGTGCCGGAGGCGCGCGCGTTCTATGGGTTCCAGCTGATGATGGAGAACATTCAC 480660 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| || |||| | ||| || | Sbjct 480659 TCCGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGTTG--C 480602 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || || ||||||| ||| | ||| ||| || || ||||| | Sbjct 480601 GGCTGCTGCACGCGATTCAGACGATCCCGTGCATCAAGAAGAAGGCAGAGTGGGCTGTAC 480542 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| || || | || | ||| || ||| || | || ||||| | ||| | Sbjct 480541 GGTGGATTGGGAG--CAGC-GCGAGCTTTCAGGAGCGACTGATTGCGTTTGCCGCGGTGG 480485 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || || || ||||| || | || ||| ||||||| ||||| || | Sbjct 480484 AGGGCATCTTCTTTTCGGGCTCGTTCTGTGCGCTGTTCTGGCTGAAGAAGCGTGGCCTGA 480425 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| | || || || ||||| ||| |||| || | Sbjct 480424 TGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGAGACGAAGGCCTGCACACGGACT 480365 Query 61634 TTGCTGTTTTGCTATTCAA-ACGC-TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 | || | || | | ||| ||| ||| || | | | || ||||| ||| Sbjct 480364 TCGCATGTCTGTTGTACAACTCGCACATCAGGCACAAGCTACCCCG--CGAGCGCGTGCT 480307 Query 61692 TGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCC 61748 |||| | |||| || ||||| | ||||| | || || |||| ||||| |||| Sbjct 480306 GGAGA-TCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTG--CGACGCGCTGCC 480250 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || ||||||||||| | | | ||| | ||||| || || || || || || Sbjct 480249 GGTGCGGCTGATCGGCATGAACTCGGAGTTGATGGCACAGTACATCGAGTTCGTGGCGGA 480190 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 ||| ||| | || | ||| | || | ||| || ||| | |||||||| || Sbjct 480189 CCGACTGCTCATCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATTTGACTT 480130 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| || Sbjct 480129 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 480070 Query 61929 TCA 61931 || Sbjct 480069 CCA 480067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566783814640