Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F000635995.1_202014-04-22] 2,801 sequences; 32,812,984 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2433 235 4e-57 seq1191 235 4e-57 seq463 233 2e-56 >seq2433 Length=14949 Score = 235 bits (260), Expect = 4e-57 Identities = 608/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| |||| ||| | || || ||||||| Sbjct 1165 GCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAA 1106 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| || ||| |||| Sbjct 1105 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTGGGCAACGACA 1047 Query 61157 TGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 1046 TGAAGGACTGGGTGAAGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 988 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | | || ||| | || Sbjct 987 TTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGAC 928 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| |||||||||| || ||||| |||||| | |||||||| ||||| Sbjct 927 GTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCAC 868 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| ||| ||| | ||| || | Sbjct 867 TCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 810 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || ||| ||||||| ||| | || ||| || || ||||| | Sbjct 809 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGC 750 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| ||| | || | || || || || | | || |||| ||| | Sbjct 749 GGTGGATTGGCAGCGGAGCG---AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGG 693 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || ||||| ||| | || ||| ||||||| || || || | Sbjct 692 AGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGA 633 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| |||| || |||||||||||| |||| || | Sbjct 632 TGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 573 Query 61634 TTGCTGTTTTGCTATTCAA-ACGCT-ATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | ||| |||| ||| | || | ||| || ||||| ||| Sbjct 572 TTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCG-CGC--GAGCGCGTGC 516 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| | ||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 515 TGGAGATCAT-CGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGC--GACGCGCTGC 459 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || ||| ||||||||||| | |||| | ||| ||||||| || || || || || Sbjct 458 CGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCG 400 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | || |||| || || | ||| || || | || || || Sbjct 399 GACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGAC 340 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| Sbjct 339 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAG 280 Query 61927 TATCA 61931 ||||| Sbjct 279 TATCA 275 Score = 235 bits (260), Expect = 4e-57 Identities = 608/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| |||| ||| | || || ||||||| Sbjct 4294 GCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAA 4235 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| || ||| |||| Sbjct 4234 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTGGGCAACGACA 4176 Query 61157 TGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 4175 TGAAGGACTGGGTGAAGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 4117 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | | || ||| | || Sbjct 4116 TTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGAC 4057 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| |||||||||| || ||||| |||||| | |||||||| ||||| Sbjct 4056 GTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCAC 3997 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| ||| ||| | ||| || | Sbjct 3996 TCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 3939 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || ||| ||||||| ||| | || ||| || || ||||| | Sbjct 3938 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGC 3879 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| ||| | || | || || || || | | || |||| ||| | Sbjct 3878 GGTGGATTGGCAGCGGAGCG---AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGG 3822 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || ||||| ||| | || ||| ||||||| || || || | Sbjct 3821 AGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGA 3762 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| |||| || |||||||||||| |||| || | Sbjct 3761 TGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 3702 Query 61634 TTGCTGTTTTGCTATTCAA-ACGCT-ATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | ||| |||| ||| | || | ||| || ||||| ||| Sbjct 3701 TTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCG-CGC--GAGCGCGTGC 3645 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| | ||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 3644 TGGAGATCAT-CGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGC--GACGCGCTGC 3588 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || ||| ||||||||||| | |||| | ||| ||||||| || || || || || Sbjct 3587 CGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCG 3529 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | || |||| || || | ||| || || | || || || Sbjct 3528 GACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGAC 3469 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| Sbjct 3468 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAG 3409 Query 61927 TATCA 61931 ||||| Sbjct 3408 TATCA 3404 >seq1191 Length=39656 Score = 235 bits (260), Expect = 4e-57 Identities = 608/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| |||| ||| | || || ||||||| Sbjct 29240 GCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAA 29181 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| || ||| |||| Sbjct 29180 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTGGGCAACGACA 29122 Query 61157 TGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 29121 TGAAGGACTGGGTGAAGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 29063 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | | || ||| | || Sbjct 29062 TTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGAC 29003 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| |||||||||| || ||||| |||||| | |||||||| ||||| Sbjct 29002 GTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCAC 28943 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| ||| ||| | ||| || | Sbjct 28942 TCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 28885 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || ||| ||||||| ||| | || ||| || || ||||| | Sbjct 28884 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGC 28825 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| ||| | || | || || || || | | || |||| ||| | Sbjct 28824 GGTGGATTGGCAGCGGAGCG---AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGG 28768 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || ||||| ||| | || ||| ||||||| || || || | Sbjct 28767 AGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGA 28708 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| |||| || |||||||||||| |||| || | Sbjct 28707 TGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 28648 Query 61634 TTGCTGTTTTGCTATTCAA-ACGCT-ATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | ||| |||| ||| | || | ||| || ||||| ||| Sbjct 28647 TTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCG-CGC--GAGCGCGTGC 28591 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| | ||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 28590 TGGAGATCAT-CGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGC--GACGCGCTGC 28534 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || ||| ||||||||||| | |||| | ||| ||||||| || || || || || Sbjct 28533 CGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCG 28475 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | || |||| || || | ||| || || | || || || Sbjct 28474 GACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGAC 28415 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| Sbjct 28414 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAG 28355 Query 61927 TATCA 61931 ||||| Sbjct 28354 TATCA 28350 >seq463 Length=3795 Score = 233 bits (258), Expect = 2e-56 Identities = 512/761 (67%), Gaps = 16/761 (2%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| || || |||| || || | ||| ||||| ||||| ||||||||| Sbjct 1447 GAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCAC 1388 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || ||||| | |||| || || ||||| ||||| |||||| Sbjct 1387 AGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCATCC 1328 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | ||| | || ||| ||||| | || ||||||| ||| ||| ||| | Sbjct 1327 TTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGTGACTCAAGGATCGCGAACCACACC 1268 Query 66194 GCGCGTGCCTTCACCGTACGTAC----CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAG 66249 | | |||| | ||| | || || ||| |||| ||||| | ||||| || Sbjct 1267 TCCTGCGCCTGGATCGTCTGCACGCCGCGGCCTTCCTTC----TCGTAGCGCTCGTACAG 1212 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 | |||| || || || | ||| ||| | || || || ||| |||||| Sbjct 1211 GCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAG 1152 Query 66310 CGACCAATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 || ||| | || || || ||| ||||| ||| || || || || ||||| | |||| Sbjct 1151 CGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAACGCGT 1093 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA--AGTCG-AGGA 66425 | ||||| || || || || || || || ||||| | |||||| || | | || Sbjct 1092 AAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGG---TGTTGCGCTTCAGCAGCAAGA 1036 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 | | ||||||||||| ||||| || || ||||| | |||||| | |||| | || || | Sbjct 1035 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 976 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 |||| || ||||| |||||||| || ||||||||||| || | |||||| || |||| Sbjct 975 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 916 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 | || || |||| || |||||| ||||| | || | || || | ||| || | Sbjct 915 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGT 856 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATA 66665 ||| ||||| || ||||||| ||| |||| | || || || || || | | | Sbjct 855 GCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTAAA 796 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 ||||||| ||| ||| |||| || | | | |||| || || | || || || | Sbjct 795 TGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCGGCTTCG 736 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 | ||| |||| ||||||||| || || |||||||| ||| Sbjct 735 GCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAG 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554428146640