Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216525.1_202017-07-11] 5,924 sequences; 27,676,155 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3869 239 4e-58 seq3131 239 4e-58 seq3130 239 4e-58 seq2006 233 2e-56 >seq3869 Length=3640 Score = 239 bits (264), Expect = 4e-58 Identities = 609/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Plus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| |||| ||| | || || ||||||| Sbjct 2690 GCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAA 2749 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| || ||| |||| Sbjct 2750 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTGGGCAACGACA 2808 Query 61157 TGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 2809 TGAAGGACTGGGTGAAGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 2867 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | | || ||| | || Sbjct 2868 TTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGAC 2927 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| |||||||||| || ||||| |||||| | |||||||| ||||| Sbjct 2928 GTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCAC 2987 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| ||| ||| | ||| || | Sbjct 2988 TCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 3045 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || ||| ||||||| ||| | || ||| || || ||||| | Sbjct 3046 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGC 3105 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| ||| | || | || || || || | | || |||| ||| | Sbjct 3106 GGTGGATCGGCAGCGGAGCG---AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGG 3162 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || ||||| ||| | || ||| ||||||| || || || | Sbjct 3163 AGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGA 3222 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| |||| || |||||||||||| |||| || | Sbjct 3223 TGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 3282 Query 61634 TTGCTGTTTTGCTATTCAA-ACGCT-ATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | ||| |||| ||| | || | ||| || ||||| ||| Sbjct 3283 TTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCG-CGC--GAGCGCGTGC 3339 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| | ||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 3340 TGGAGATCAT-CGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGC--GACGCGCTGC 3396 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || ||| ||||||||||| | |||| | ||| ||||||| || || || || || Sbjct 3397 CGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCG 3455 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | || |||| || || | ||| || || | || || || Sbjct 3456 GACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGAC 3515 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| Sbjct 3516 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAG 3575 Query 61927 TATCA 61931 ||||| Sbjct 3576 TATCA 3580 >seq3131 Length=4254 Score = 239 bits (264), Expect = 4e-58 Identities = 609/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Plus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| |||| ||| | || || ||||||| Sbjct 3 GCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAA 62 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| || ||| |||| Sbjct 63 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTGGGCAACGACA 121 Query 61157 TGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 122 TGAAGGACTGGGTGAAGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 180 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | | || ||| | || Sbjct 181 TTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGAC 240 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| |||||||||| || ||||| |||||| | |||||||| ||||| Sbjct 241 GTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCAC 300 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| ||| ||| | ||| || | Sbjct 301 TCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 358 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || ||| ||||||| ||| | || ||| || || ||||| | Sbjct 359 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGC 418 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| ||| | || | || || || || | | || |||| ||| | Sbjct 419 GGTGGATCGGCAGCGGAGCG---AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGG 475 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || ||||| ||| | || ||| ||||||| || || || | Sbjct 476 AGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGA 535 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| |||| || |||||||||||| |||| || | Sbjct 536 TGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 595 Query 61634 TTGCTGTTTTGCTATTCAA-ACGCT-ATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | ||| |||| ||| | || | ||| || ||||| ||| Sbjct 596 TTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCG-CGC--GAGCGCGTGC 652 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| | ||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 653 TGGAGATCAT-CGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGC--GACGCGCTGC 709 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || ||| ||||||||||| | |||| | ||| ||||||| || || || || || Sbjct 710 CGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCG 768 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | || |||| || || | ||| || || | || || || Sbjct 769 GACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGAC 828 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| Sbjct 829 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAG 888 Query 61927 TATCA 61931 ||||| Sbjct 889 TATCA 893 >seq3130 Length=3696 Score = 239 bits (264), Expect = 4e-58 Identities = 609/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Minus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| |||| ||| | || || ||||||| Sbjct 951 GCAGGAGAACCCGTTCCGCTTCGTGCTGTTCCCGATCGTGTACCACGACATCTGGCGCAA 892 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| || ||| |||| Sbjct 891 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTGGGCAACGACA 833 Query 61157 TGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | | | | ||| ||| || | || ||||| || || ||| | || Sbjct 832 TGAAGGACTGGGTGAAGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCACGTGCTTGCC 774 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | | || ||| | || Sbjct 773 TTCTTCGCAGGCAGCGACGGCATCGTGATCGAGAACCTTGCGCAGCGCTTCATGAGCGAC 714 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| |||||||||| || ||||| |||||| | |||||||| ||||| Sbjct 713 GTGAAGGTGCCGGAGGCGCGCGCGTTTTACGGGTTCCAGCTGATGATGGAGAACATCCAC 654 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || |||| |||| || || | || |||||||||| ||| ||| | ||| || | Sbjct 653 TCAGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 596 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || ||| ||||||| ||| | || ||| || || ||||| | Sbjct 595 GGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGC 536 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| ||| | || | || || || || | | || |||| ||| | Sbjct 535 GGTGGATCGGCAGCGGAGCG---AGCTTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGG 479 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || ||||| ||| | || ||| ||||||| || || || | Sbjct 478 AGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGA 419 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || ||||| |||||||| ||| |||| || |||||||||||| |||| || | Sbjct 418 TGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 359 Query 61634 TTGCTGTTTTGCTATTCAA-ACGCT-ATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | ||| |||| ||| | || | ||| || ||||| ||| Sbjct 358 TTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCG-CGC--GAGCGCGTGC 302 Query 61691 GTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| | ||| || ||||| | ||||| | || || |||| ||||| ||| Sbjct 301 TGGAGATCAT-CGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGC--GACGCGCTGC 245 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 | || ||| ||||||||||| | |||| | ||| ||||||| || || || || || Sbjct 244 CGGTGCGACTGATCGGCATGAAC-GCGGACCTGATGGCGCAGTACATCGAGTTCGTGGCG 186 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | || |||| || || | ||| || || | || || || Sbjct 185 GACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGAC 126 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| ||||| |||||| | ||||||||||| || |||||||| || ||||| Sbjct 125 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAG 66 Query 61927 TATCA 61931 ||||| Sbjct 65 TATCA 61 >seq2006 Length=20365 Score = 233 bits (258), Expect = 2e-56 Identities = 512/761 (67%), Gaps = 16/761 (2%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| || || |||| || || | ||| ||||| ||||| ||||||||| Sbjct 3676 GAGGCGAGGTTGCACACGGCAGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCAC 3735 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| || ||||| | |||| || || ||||| |||||||||||| Sbjct 3736 AGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCATGCATCC 3795 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | ||| | || ||| ||||| | || ||||||| ||| ||| ||| | Sbjct 3796 TTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACACC 3855 Query 66194 GCGCGTGCCTTCACCGTACGTAC----CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAG 66249 | | |||| | ||| | || || || |||| ||||| | ||||| || Sbjct 3856 TCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCCTTC----TCGTAGCGCTCGTACAG 3911 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 | |||| || || || | ||| ||| | || || || ||| |||||| Sbjct 3912 GCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAG 3971 Query 66310 CGACCAATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 || ||| | || || || ||| ||||| ||| || || || || ||||| | |||| Sbjct 3972 CGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAACGCGT 4030 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCA--AGTCG-AGGA 66425 | ||||| || || || || || || || ||||| | |||||| || | | || Sbjct 4031 AAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCGG---TGTTGCGCTTCAGCAGCAAGA 4087 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 | | ||||||||||| ||||| || || ||||| | |||||| | |||| | || || | Sbjct 4088 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 4147 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 |||| || ||||| |||||||| || ||||||||||| || | |||||| || |||| Sbjct 4148 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 4207 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 | || || |||| || |||||| ||||| | || | || || | ||| || | Sbjct 4208 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGT 4267 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATA 66665 ||| ||||| || ||||||| ||| |||| | || || || || || | | | Sbjct 4268 GCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTAAA 4327 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 ||||||| ||| ||| |||| || | | | |||| || || | || || || | Sbjct 4328 TGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCGGCTTCG 4387 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 | ||| |||| ||||||||| || || |||||||| ||| Sbjct 4388 GCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAG 4428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539296087360