Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq295 105 1e-20 seq213 105 1e-20 seq181 105 1e-20 seq95 105 1e-20 seq94 105 1e-20 >seq295 Length=62094 Score = 105 bits (116), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 15/233 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||||||||||| | | ||||||| | || ||||| || ||| Sbjct 40977 GTACAAATGGCAGGGACGTAGTCAATGTG-CTTTGATGAAGCACGTCTACTA-GACATTC 40920 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| |||| || |||||||| || ||||| | ||||| | |||| ||| || Sbjct 40919 CTCGTTCAAGAAGAATAATTGCAAGCTTCGATCCCAAGCACGACATAGTTTTCGAAGTTT 40860 Query 120 ACCCGGACCTGTCGG---------CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||| |||||||| | ||||| | |||| || | | ||| ||||| Sbjct 40859 TCCCACTCCTGTCGGAGCAGGACCCGAAGGT--TTCACTCATTCACTTTGTCATTGTAGT 40802 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||| |||||| |||| || | ||||||| |||||| | ||||| |||| Sbjct 40801 GCGCGTGTCGCCCAGGACATTTAGGAGCATCACGGACCTGCTGTTGCC-CAAA 40750 >seq213 Length=77040 Score = 105 bits (116), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 15/233 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||||||||||| | | ||||||| | || ||||| || ||| Sbjct 75681 GTACAAATGGCAGGGACGTAGTCAATGTG-CTTTGATGAAGCACGTCTACTA-GACATTC 75624 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| |||| || |||||||| || ||||| | ||||| | |||| ||| || Sbjct 75623 CTCGTTCAAGAAGAATAATTGCAAGCTTCGATCCCAAGCACGACATAGTTTTCGAAGTTT 75564 Query 120 ACCCGGACCTGTCGG---------CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||| |||||||| | ||||| | |||| || | | ||| ||||| Sbjct 75563 TCCCACTCCTGTCGGAGCAGGACCCGAAGGT--TTCACTCATTCACTTTGTCATTGTAGT 75506 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||| |||||| |||| || | ||||||| |||||| | ||||| |||| Sbjct 75505 GCGCGTGTCGCCCAGGACATTTAGGAGCATCACGGACCTGCTGTTGCC-CAAA 75454 >seq181 Length=22678 Score = 105 bits (116), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 15/233 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||||||||||| | | ||||||| | || ||||| || ||| Sbjct 21742 GTACAAATGGCAGGGACGTAGTCAATGTG-CTTTGATGAAGCACGTCTACTA-GACATTC 21685 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| |||| || |||||||| || ||||| | ||||| | |||| ||| || Sbjct 21684 CTCGTTCAAGAAGAATAATTGCAAGCTTCGATCCCAAGCACGACATAGTTTTCGAAGTTT 21625 Query 120 ACCCGGACCTGTCGG---------CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||| |||||||| | ||||| | |||| || | | ||| ||||| Sbjct 21624 TCCCACTCCTGTCGGAGCAGGACCCGAAGGT--TTCACTCATTCACTTTGTCATTGTAGT 21567 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||| |||||| |||| || | ||||||| |||||| | ||||| |||| Sbjct 21566 GCGCGTGTCGCCCAGGACATTTAGGAGCATCACGGACCTGCTGTTGCC-CAAA 21515 >seq95 Length=35521 Score = 105 bits (116), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 15/233 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||||||||||| | | ||||||| | || ||||| || ||| Sbjct 34599 GTACAAATGGCAGGGACGTAGTCAATGTG-CTTTGATGAAGCACGTCTACTA-GACATTC 34542 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| |||| || |||||||| || ||||| | ||||| | |||| ||| || Sbjct 34541 CTCGTTCAAGAAGAATAATTGCAAGCTTCGATCCCAAGCACGACATAGTTTTCGAAGTTT 34482 Query 120 ACCCGGACCTGTCGG---------CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||| |||||||| | ||||| | |||| || | | ||| ||||| Sbjct 34481 TCCCACTCCTGTCGGAGCAGGACCCGAAGGT--TTCACTCATTCACTTTGTCATTGTAGT 34424 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||| |||||| |||| || | ||||||| |||||| | ||||| |||| Sbjct 34423 GCGCGTGTCGCCCAGGACATTTAGGAGCATCACGGACCTGCTGTTGCC-CAAA 34372 >seq94 Length=35646 Score = 105 bits (116), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 15/233 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||||||||||| | | ||||||| | || ||||| || ||| Sbjct 914 GTACAAATGGCAGGGACGTAGTCAATGTG-CTTTGATGAAGCACGTCTACTA-GACATTC 971 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| |||| || |||||||| || ||||| | ||||| | |||| ||| || Sbjct 972 CTCGTTCAAGAAGAATAATTGCAAGCTTCGATCCCAAGCACGACATAGTTTTCGAAGTTT 1031 Query 120 ACCCGGACCTGTCGG---------CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||| |||||||| | ||||| | |||| || | | ||| ||||| Sbjct 1032 TCCCACTCCTGTCGGAGCAGGACCCGAAGGT--TTCACTCATTCACTTTGTCATTGTAGT 1089 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||| |||||| |||| || | ||||||| |||||| | ||||| |||| Sbjct 1090 GCGCGTGTCGCCCAGGACATTTAGGAGCATCACGGACCTGCTGTTGCC-CAAA 1141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751994951495