Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq295 140 1e-30 seq213 129 2e-27 seq181 129 2e-27 seq95 129 2e-27 seq94 129 2e-27 >seq295 Length=62094 Score = 140 bits (154), Expect = 1e-30 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||| ||||||| |||||||||||||||| |||||| ||||||||||||||| ||| Sbjct 42264 TTGAGCTTGAGCATATATGTTGGGACCCGAAAGGTGGTGACCTATGCCTGAATAGGATGA 42323 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| |||||| ||||||||| ||||||| | || |||||||||| |||| | Sbjct 42324 AGCCGAGGGAAACCTTGGTGGAGGTCCGCAGCGATGTTGACGTGCAAATCACTCGTTTGA 42383 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||||||||||| Sbjct 42384 TTTGGGTATAGGGGCGA 42400 Score = 129 bits (142), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT--TGGCC 106 || |||||||||||| | || || ||||| | ||| | || ||||||||| ||| Sbjct 41732 TGCTTGGGAATGCAGTGCGAAC-GGCAGGTATACCTCTGCCAAGGCTAAATATCATGGG- 41789 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct 41790 -GAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGATGAAAAGCACTTTGGAGAGAGAGT 41848 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||| |||| ||||| ||| ||| Sbjct 41849 GAAACAGCACCTGAAGCTGTTGTGAGGTAAG 41879 >seq213 Length=77040 Score = 129 bits (142), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT--TGGCC 106 || |||||||||||| | || || ||||| | ||| | || ||||||||| ||| Sbjct 76436 TGCTTGGGAATGCAGTGCGAAC-GGCAGGTATACCTCTGCCAAGGCTAAATATCATGGG- 76493 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct 76494 -GAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGATGAAAAGCACTTTGGAGAGAGAGT 76552 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||| |||| ||||| ||| ||| Sbjct 76553 GAAACAGCACCTGAAGCTGTTGTGAGGTAAG 76583 Score = 82.4 bits (90), Expect = 3e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||| ||||||| |||||||||||||||| |||||| ||||||||||||||| ||| Sbjct 76968 TTGAGCTTGAGCATATATGTTGGGACCCGAAAGGTGGTGACCTATGCCTGAATAGGATGA 77027 Query 607 AGCCAGAGGAAAC 619 |||| |||||| Sbjct 77028 AGCCGAGGGAAAC 77040 >seq181 Length=22678 Score = 129 bits (142), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT--TGGCC 106 || |||||||||||| | || || ||||| | ||| | || ||||||||| ||| Sbjct 22497 TGCTTGGGAATGCAGTGCGAAC-GGCAGGTATACCTCTGCCAAGGCTAAATATCATGGG- 22554 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct 22555 -GAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGATGAAAAGCACTTTGGAGAGAGAGT 22613 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||| |||| ||||| ||| ||| Sbjct 22614 GAAACAGCACCTGAAGCTGTTGTGAGGTAAG 22644 >seq95 Length=35521 Score = 129 bits (142), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT--TGGCC 106 || |||||||||||| | || || ||||| | ||| | || ||||||||| ||| Sbjct 35354 TGCTTGGGAATGCAGTGCGAAC-GGCAGGTATACCTCTGCCAAGGCTAAATATCATGGG- 35411 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct 35412 -GAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGATGAAAAGCACTTTGGAGAGAGAGT 35470 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||| |||| ||||| ||| ||| Sbjct 35471 GAAACAGCACCTGAAGCTGTTGTGAGGTAAG 35501 >seq94 Length=35646 Score = 129 bits (142), Expect = 2e-27 Identities = 121/151 (80%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT--TGGCC 106 || |||||||||||| | || || ||||| | ||| | || ||||||||| ||| Sbjct 159 TGCTTGGGAATGCAGTGCGAAC-GGCAGGTATACCTCTGCCAAGGCTAAATATCATGGG- 102 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct 101 -GAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGATGAAAAGCACTTTGGAGAGAGAGT 43 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||| |||| ||||| ||| ||| Sbjct 42 GAAACAGCACCTGAAGCTGTTGTGAGGTAAG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079985135150