Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq295 140 6e-31 seq213 140 6e-31 seq181 140 6e-31 seq95 140 6e-31 seq94 140 6e-31 >seq295 Length=62094 Score = 140 bits (154), Expect = 6e-31 Identities = 173/236 (73%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 ||| | |||| ||||| | |||||| ||||||| | || |||| |||||| ||||||| Sbjct 40744 TGGCATTTTG-GGCAACAGCAGGTCCGTGATGCTCCTAAATGTCCTGGGCGACACGCGCA 40802 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGG---------CCGGAAGGTCTGGGTA 212 ||||| ||||| || || |||| | ||||| | ||| ||| |||| | Sbjct 40803 CTACAATGACAAAGTGAATGAGTGAA--ACCTTCGGGTCCTGCTCCGACAGGAGTGGGAA 40860 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | ||| ||||| ||||||||| ||||| || ||||||||||| |||| ||||||| Sbjct 40861 AACTTCGAAAACTATGTCGTGCTTGGGATCGAAGCTTGCAATTATTCTTCTTGAACGAGG 40920 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||| || | |||||| | | |||| |||||||||||| |||||| Sbjct 40921 AATGTCTAGTAGACGTGCTTCATCAAAGCACATTGACTACGTCCCTGCCATTTGTA 40976 >seq213 Length=77040 Score = 140 bits (154), Expect = 6e-31 Identities = 173/236 (73%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 ||| | |||| ||||| | |||||| ||||||| | || |||| |||||| ||||||| Sbjct 75448 TGGCATTTTG-GGCAACAGCAGGTCCGTGATGCTCCTAAATGTCCTGGGCGACACGCGCA 75506 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGG---------CCGGAAGGTCTGGGTA 212 ||||| ||||| || || |||| | ||||| | ||| ||| |||| | Sbjct 75507 CTACAATGACAAAGTGAATGAGTGAA--ACCTTCGGGTCCTGCTCCGACAGGAGTGGGAA 75564 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | ||| ||||| ||||||||| ||||| || ||||||||||| |||| ||||||| Sbjct 75565 AACTTCGAAAACTATGTCGTGCTTGGGATCGAAGCTTGCAATTATTCTTCTTGAACGAGG 75624 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||| || | |||||| | | |||| |||||||||||| |||||| Sbjct 75625 AATGTCTAGTAGACGTGCTTCATCAAAGCACATTGACTACGTCCCTGCCATTTGTA 75680 >seq181 Length=22678 Score = 140 bits (154), Expect = 6e-31 Identities = 173/236 (73%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 ||| | |||| ||||| | |||||| ||||||| | || |||| |||||| ||||||| Sbjct 21509 TGGCATTTTG-GGCAACAGCAGGTCCGTGATGCTCCTAAATGTCCTGGGCGACACGCGCA 21567 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGG---------CCGGAAGGTCTGGGTA 212 ||||| ||||| || || |||| | ||||| | ||| ||| |||| | Sbjct 21568 CTACAATGACAAAGTGAATGAGTGAA--ACCTTCGGGTCCTGCTCCGACAGGAGTGGGAA 21625 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | ||| ||||| ||||||||| ||||| || ||||||||||| |||| ||||||| Sbjct 21626 AACTTCGAAAACTATGTCGTGCTTGGGATCGAAGCTTGCAATTATTCTTCTTGAACGAGG 21685 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||| || | |||||| | | |||| |||||||||||| |||||| Sbjct 21686 AATGTCTAGTAGACGTGCTTCATCAAAGCACATTGACTACGTCCCTGCCATTTGTA 21741 >seq95 Length=35521 Score = 140 bits (154), Expect = 6e-31 Identities = 173/236 (73%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 ||| | |||| ||||| | |||||| ||||||| | || |||| |||||| ||||||| Sbjct 34366 TGGCATTTTG-GGCAACAGCAGGTCCGTGATGCTCCTAAATGTCCTGGGCGACACGCGCA 34424 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGG---------CCGGAAGGTCTGGGTA 212 ||||| ||||| || || |||| | ||||| | ||| ||| |||| | Sbjct 34425 CTACAATGACAAAGTGAATGAGTGAA--ACCTTCGGGTCCTGCTCCGACAGGAGTGGGAA 34482 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | ||| ||||| ||||||||| ||||| || ||||||||||| |||| ||||||| Sbjct 34483 AACTTCGAAAACTATGTCGTGCTTGGGATCGAAGCTTGCAATTATTCTTCTTGAACGAGG 34542 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||| || | |||||| | | |||| |||||||||||| |||||| Sbjct 34543 AATGTCTAGTAGACGTGCTTCATCAAAGCACATTGACTACGTCCCTGCCATTTGTA 34598 >seq94 Length=35646 Score = 140 bits (154), Expect = 6e-31 Identities = 173/236 (73%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 ||| | |||| ||||| | |||||| ||||||| | || |||| |||||| ||||||| Sbjct 1147 TGGCATTTTG-GGCAACAGCAGGTCCGTGATGCTCCTAAATGTCCTGGGCGACACGCGCA 1089 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGG---------CCGGAAGGTCTGGGTA 212 ||||| ||||| || || |||| | ||||| | ||| ||| |||| | Sbjct 1088 CTACAATGACAAAGTGAATGAGTGAA--ACCTTCGGGTCCTGCTCCGACAGGAGTGGGAA 1031 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | ||| ||||| ||||||||| ||||| || ||||||||||| |||| ||||||| Sbjct 1030 AACTTCGAAAACTATGTCGTGCTTGGGATCGAAGCTTGCAATTATTCTTCTTGAACGAGG 971 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||| || | |||||| | | |||| |||||||||||| |||||| Sbjct 970 AATGTCTAGTAGACGTGCTTCATCAAAGCACATTGACTACGTCCCTGCCATTTGTA 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947193435904