Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq376 347 4e-93 seq295 347 4e-93 seq122 347 4e-93 seq65 347 4e-93 seq37 109 2e-21 >seq376 Length=54760 Score = 347 bits (384), Expect = 4e-93 Identities = 257/298 (86%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| ||||||||| | | | ||||| | |||| ||||||| |||| Sbjct 1477 CTCCCACCTATGACTACACCTCCTATGCCGCCCGACAAACTGAGACTGGAGTCAAACTCA 1418 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG--GCTGTGGTTTCGC 353 ||||||||||||||||||||| | || |||| ||||||||||| || || | ||||| Sbjct 1417 ACAGGGTCTTCTTTCCCCGCTTAATCATTCAAGACCGTTCCCTTGACGCAGTTGGTTCGC 1358 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1357 TAGATGGTAGCTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTAG 1298 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 AAGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCG 1238 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | ||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1237 TAGGTGAATCTCGTCACATTGACATTCAGAGCACTGGGCAGAAATCAGCTTGCGTCAA 1180 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| ||| ||||||| ||| |||| | |||||||||||||||||| | Sbjct 1767 CTTGTGCTCTACGTGAGGTTTCTGTCCTCACTGAGCTCGCCTTAGGACACCTGCGTTGTT 1708 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||| ||||| ||||||||||||||||||||||| || Sbjct 1707 GTTTAGCAGATATGCCGCCCCAGCCAAACTCCCCATCT 1670 >seq295 Length=62094 Score = 347 bits (384), Expect = 4e-93 Identities = 257/298 (86%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| ||||||||| | | | ||||| | |||| ||||||| |||| Sbjct 43608 CTCCCACCTATGACTACACCTCCTATGCCGCCCGACAAACTGAGACTGGAGTCAAACTCA 43549 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG--GCTGTGGTTTCGC 353 ||||||||||||||||||||| | || |||| ||||||||||| || || | ||||| Sbjct 43548 ACAGGGTCTTCTTTCCCCGCTTAATCATTCAAGACCGTTCCCTTGACGCAGTTGGTTCGC 43489 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 43488 TAGATGGTAGCTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTAG 43429 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43428 AAGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCG 43369 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | ||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 43368 TAGGTGAATCTCGTCACATTGACATTCAGAGCACTGGGCAGAAATCAGCTTGCGTCAA 43311 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| ||| ||||||| ||| |||| | |||||||||||||||||| | Sbjct 43898 CTTGTGCTCTACGTGAGGTTTCTGTCCTCACTGAGCTCGCCTTAGGACACCTGCGTTGTT 43839 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||| ||||| ||||||||||||||||||||||| || Sbjct 43838 GTTTAGCAGATATGCCGCCCCAGCCAAACTCCCCATCT 43801 >seq122 Length=470851 Score = 347 bits (384), Expect = 4e-93 Identities = 257/298 (86%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| ||||||||| | | | ||||| | |||| ||||||| |||| Sbjct 1477 CTCCCACCTATGACTACACCTCCTATGCCGCCCGACAAACTGAGACTGGAGTCAAACTCA 1418 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG--GCTGTGGTTTCGC 353 ||||||||||||||||||||| | || |||| ||||||||||| || || | ||||| Sbjct 1417 ACAGGGTCTTCTTTCCCCGCTTAATCATTCAAGACCGTTCCCTTGACGCAGTTGGTTCGC 1358 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1357 TAGATGGTAGCTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTAG 1298 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 AAGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCG 1238 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | ||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1237 TAGGTGAATCTCGTCACATTGACATTCAGAGCACTGGGCAGAAATCAGCTTGCGTCAA 1180 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| ||| ||||||| ||| |||| | |||||||||||||||||| | Sbjct 1767 CTTGTGCTCTACGTGAGGTTTCTGTCCTCACTGAGCTCGCCTTAGGACACCTGCGTTGTT 1708 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||| ||||| ||||||||||||||||||||||| || Sbjct 1707 GTTTAGCAGATATGCCGCCCCAGCCAAACTCCCCATCT 1670 >seq65 Length=9442 Score = 347 bits (384), Expect = 4e-93 Identities = 257/298 (86%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| ||||||||| | | | ||||| | |||| ||||||| |||| Sbjct 542 CTCCCACCTATGACTACACCTCCTATGCCGCCCGACAAACTGAGACTGGAGTCAAACTCA 483 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG--GCTGTGGTTTCGC 353 ||||||||||||||||||||| | || |||| ||||||||||| || || | ||||| Sbjct 482 ACAGGGTCTTCTTTCCCCGCTTAATCATTCAAGACCGTTCCCTTGACGCAGTTGGTTCGC 423 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 422 TAGATGGTAGCTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTAG 363 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 AAGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCG 303 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | ||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 302 TAGGTGAATCTCGTCACATTGACATTCAGAGCACTGGGCAGAAATCAGCTTGCGTCAA 245 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| ||| ||||||| ||| |||| | |||||||||||||||||| | Sbjct 832 CTTGTGCTCTACGTGAGGTTTCTGTCCTCACTGAGCTCGCCTTAGGACACCTGCGTTGTT 773 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||| ||||| ||||||||||||||||||||||| || Sbjct 772 GTTTAGCAGATATGCCGCCCCAGCCAAACTCCCCATCT 735 >seq37 Length=44803 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| ||| ||||||| ||| |||| | |||||||||||||||||| | Sbjct 44670 CTTGTGCTCTACGTGAGGTTTCTGTCCTCACTGAGCTCGCCTTAGGACACCTGCGTTGTT 44729 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||| ||||| ||||||||||||||||||||||| || Sbjct 44730 GTTTAGCAGATATGCCGCCCCAGCCAAACTCCCCATCT 44767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635188668064