Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq295 168 2e-39 seq213 168 2e-39 seq181 168 2e-39 seq95 168 2e-39 seq94 168 2e-39 >seq295 Length=62094 Score = 168 bits (186), Expect = 2e-39 Identities = 147/180 (82%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | || || |||| ||| | || |||||| ||||| ||||||||||||| ||| Sbjct 39686 TATTTTTCTTCGCTGCCTCGCCGATTTGGCATTGGGCAATTTACGCGCCTGCTGCCCTCC 39627 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || |||||||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct 39626 GTAGAAGTGGTAGCTATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG-TA 39568 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| ||| || |||||||| | || |||||||||||| | ||| Sbjct 39567 CCCGTTATCGCCATGGTAGTCCAATACACTACCATC-AGAGCTGATAGGGCAGAGACTTG 39509 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||| ||||||| |||| | || | ||| ||||| | |||||| Sbjct 39273 CTGATATAATGAGCCGTTCGCAGACCTCCTGTGAA-ATAGGTTACTCTTAGGCTTGCATG 39215 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| |||||||||||||||||||||| Sbjct 39214 GCTTAATCCTTGAAACAAGCATATGACTACTGGCAG 39179 >seq213 Length=77040 Score = 168 bits (186), Expect = 2e-39 Identities = 147/180 (82%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | || || |||| ||| | || |||||| ||||| ||||||||||||| ||| Sbjct 74390 TATTTTTCTTCGCTGCCTCGCCGATTTGGCATTGGGCAATTTACGCGCCTGCTGCCCTCC 74331 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || |||||||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct 74330 GTAGAAGTGGTAGCTATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG-TA 74272 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| ||| || |||||||| | || |||||||||||| | ||| Sbjct 74271 CCCGTTATCGCCATGGTAGTCCAATACACTACCATC-AGAGCTGATAGGGCAGAGACTTG 74213 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||| ||||||| |||| | || | ||| ||||| | |||||| Sbjct 73977 CTGATATAATGAGCCGTTCGCAGACCTCCTGTGAA-ATAGGTTACTCTTAGGCTTGCATG 73919 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| |||||||||||||||||||||| Sbjct 73918 GCTTAATCCTTGAAACAAGCATATGACTACTGGCAG 73883 >seq181 Length=22678 Score = 168 bits (186), Expect = 2e-39 Identities = 147/180 (82%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | || || |||| ||| | || |||||| ||||| ||||||||||||| ||| Sbjct 20451 TATTTTTCTTCGCTGCCTCGCCGATTTGGCATTGGGCAATTTACGCGCCTGCTGCCCTCC 20392 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || |||||||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct 20391 GTAGAAGTGGTAGCTATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG-TA 20333 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| ||| || |||||||| | || |||||||||||| | ||| Sbjct 20332 CCCGTTATCGCCATGGTAGTCCAATACACTACCATC-AGAGCTGATAGGGCAGAGACTTG 20274 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||| ||||||| |||| | || | ||| ||||| | |||||| Sbjct 20038 CTGATATAATGAGCCGTTCGCAGACCTCCTGTGAA-ATAGGTTACTCTTAGGCTTGCATG 19980 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| |||||||||||||||||||||| Sbjct 19979 GCTTAATCCTTGAAACAAGCATATGACTACTGGCAG 19944 >seq95 Length=35521 Score = 168 bits (186), Expect = 2e-39 Identities = 147/180 (82%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | || || |||| ||| | || |||||| ||||| ||||||||||||| ||| Sbjct 33308 TATTTTTCTTCGCTGCCTCGCCGATTTGGCATTGGGCAATTTACGCGCCTGCTGCCCTCC 33249 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || |||||||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct 33248 GTAGAAGTGGTAGCTATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG-TA 33190 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| ||| || |||||||| | || |||||||||||| | ||| Sbjct 33189 CCCGTTATCGCCATGGTAGTCCAATACACTACCATC-AGAGCTGATAGGGCAGAGACTTG 33131 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||| ||||||| |||| | || | ||| ||||| | |||||| Sbjct 32895 CTGATATAATGAGCCGTTCGCAGACCTCCTGTGAA-ATAGGTTACTCTTAGGCTTGCATG 32837 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| |||||||||||||||||||||| Sbjct 32836 GCTTAATCCTTGAAACAAGCATATGACTACTGGCAG 32801 >seq94 Length=35646 Score = 168 bits (186), Expect = 2e-39 Identities = 147/180 (82%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | || || |||| ||| | || |||||| ||||| ||||||||||||| ||| Sbjct 2205 TATTTTTCTTCGCTGCCTCGCCGATTTGGCATTGGGCAATTTACGCGCCTGCTGCCCTCC 2264 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || |||||||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct 2265 GTAGAAGTGGTAGCTATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG-TA 2323 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| ||| || |||||||| | || |||||||||||| | ||| Sbjct 2324 CCCGTTATCGCCATGGTAGTCCAATACACTACCATC-AGAGCTGATAGGGCAGAGACTTG 2382 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| ||||||||| ||||||| |||| | || | ||| ||||| | |||||| Sbjct 2618 CTGATATAATGAGCCGTTCGCAGACCTCCTGTGAA-ATAGGTTACTCTTAGGCTTGCATG 2676 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| |||||||||||||||||||||| Sbjct 2677 GCTTAATCCTTGAAACAAGCATATGACTACTGGCAG 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510389532928