Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq531 205 7e-48 seq171 205 7e-48 seq243 197 1e-45 seq254 161 8e-35 >seq531 Length=50098 Score = 205 bits (226), Expect = 7e-48 Identities = 576/878 (66%), Gaps = 20/878 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||||||||| ||||||||| | |||||| | || || ||||| || | Sbjct 47158 TGTTTCCAATCGAGTATCCCGATATTTGGAAGAAATACAAAGAAGCAGAGGCTTCGTTTT 47217 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC----GTTTATCG 61179 |||| || || || || || | ||| |||| | || || ||||| | ||| || Sbjct 47218 GGACAGTTGAAGAAGTAGACCTTTCCCAAGATGTTAAAGAATGGGAAGACAAGCTTAACG 47277 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | || || | || ||||| || || || |||| || || || || || || || || Sbjct 47278 A-CGACGAGCGTCACTTCATCAAGCACGTTCTGGCATTTTTCGCAGCATCTGATGGAATA 47336 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| ||||||| | || ||| ||| | | || | || | | || | ||||| Sbjct 47337 GTCCTTGAGAATCTTGCGGCACGCTTCATGAACGACATTCAGATCGCTGAAGTTCGTTGC 47396 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 || || || ||||| || || || || ||| | |||||||||||||| | || ||| Sbjct 47397 TTTTATGGTTTCCAAATCGCGATTGAAAATATTCACTCGGAGATGTATTCCATCCTGATC 47456 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || ||||| |||| | | | || || | | | | ||||| || || ||||| || Sbjct 47457 GACACGTATATCAAGAACCAAGCAGATAAGGCAAGGCTCTTCAACGCTATGGAGACTATT 47516 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| || ||| ||| || | ||||| | || ||||| | | || | | | Sbjct 47517 CCGTGTGTTCAGCAGAAGGCTCAATGGGCAATTAAATGGAT---TAATTCAGCAGACTCG 47573 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | ||| || | | | || || | || ||||| | || ||||||||| || Sbjct 47574 TTCGCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGTGGAAGTTTC 47633 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||||| || ||| | ||||| || ||| | ||||| ||| | |||||||| || ||| Sbjct 47634 TGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTCAGTAACGAG 47693 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-- 61657 | || || || || ||||| |||| ||||| || ||| | | ||| || ||| Sbjct 47694 CTCATTTCCCGTGATGAGGGGTTGCACTGTGACTTCGCTTGTCTCTTATACA---GCTCA 47750 Query 61658 -ATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | || ||| | ||| |||| || || | || | | ||||| || | Sbjct 47751 CACTTGAAGAACAAGCTGTCACAGGACCGAGTACATTCAATCATCCACGAGGCCGTCAAA 47810 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| || || ||| |||| || || | ||||| ||||||||| ||||| | Sbjct 47811 ATCGAGCAAGAGTTTGTGACCGATGCGCTTCCCGTGCGACTCATCGGGATGAACGCAGAT 47870 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTAT--G 61833 || ||| ||||| ||||| || ||||| |||||| | || | | |||||| | Sbjct 47871 CTTATGAACCAGTACATTGAGTTCTGCGCCGATCGTCTGATCACCGCACTCGGGTATGAG 47930 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 |||||| || || |||||||| ||||| || ||||| |||||||| || | || Sbjct 47931 AAGCGG---TACAAAGTCAAAAACCCGTTTGACTTTATGGAAATGATTTCTCTCCAGGGA 47987 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || || || ||||| || || || |||||||| Sbjct 47988 AAGACAAACTTCTTTGAGAAGCGCGTCGGTGACTATCA 48025 >seq171 Length=86538 Score = 205 bits (226), Expect = 7e-48 Identities = 576/878 (66%), Gaps = 20/878 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||||||||| ||||||||| | |||||| | || || ||||| || | Sbjct 4172 TGTTTCCAATCGAGTATCCCGATATTTGGAAGAAATACAAAGAAGCAGAGGCTTCGTTTT 4231 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC----GTTTATCG 61179 |||| || || || || || | ||| |||| | || || ||||| | ||| || Sbjct 4232 GGACAGTTGAAGAAGTAGACCTTTCCCAAGATGTTAAAGAATGGGAAGACAAGCTTAACG 4291 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | || || | || ||||| || || || |||| || || || || || || || || Sbjct 4292 A-CGACGAGCGTCACTTCATCAAGCACGTTCTGGCATTTTTCGCAGCATCTGATGGAATA 4350 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| ||||||| | || ||| ||| | | || | || | | || | ||||| Sbjct 4351 GTCCTTGAGAATCTTGCGGCACGCTTCATGAACGACATTCAGATCGCTGAAGTTCGTTGC 4410 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 || || || ||||| || || || || ||| | |||||||||||||| | || ||| Sbjct 4411 TTTTATGGTTTCCAAATCGCGATTGAAAATATTCACTCGGAGATGTATTCCATCCTGATC 4470 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || ||||| |||| | | | || || | | | | ||||| || || ||||| || Sbjct 4471 GACACGTATATCAAGAACCAAGCAGATAAGGCAAGGCTCTTCAACGCTATGGAGACTATT 4530 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| || ||| ||| || | ||||| | || ||||| | | || | | | Sbjct 4531 CCGTGTGTTCAGCAGAAGGCTCAGTGGGCAATTAAATGGAT---TAATTCAGCAGACTCG 4587 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | ||| || | | | || || | || ||||| | || ||||||||| || Sbjct 4588 TTCGCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGTGGAAGTTTC 4647 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||||| || ||| | ||||| || ||| | ||||| ||| | |||||||| || ||| Sbjct 4648 TGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTCAGTAACGAG 4707 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-- 61657 | || || || || ||||| |||| ||||| || ||| | | ||| || ||| Sbjct 4708 CTCATTTCCCGTGATGAGGGGTTGCACTGTGACTTCGCTTGTCTCTTATACA---GCTCA 4764 Query 61658 -ATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | || ||| | ||| |||| || || | || | | ||||| || | Sbjct 4765 CACTTGAAGAACAAGCTGTCACAGGACCGAGTACATTCAATCATCCACGAGGCCGTCAAA 4824 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| || || ||| |||| || || | ||||| ||||||||| ||||| | Sbjct 4825 ATCGAGCAAGAGTTTGTGACCGATGCGCTTCCCGTGCGACTCATCGGGATGAACGCAGAT 4884 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTAT--G 61833 || ||| ||||| ||||| || ||||| |||||| | || | | |||||| | Sbjct 4885 CTTATGAACCAGTACATTGAGTTCTGCGCCGATCGTCTGATCACCGCACTCGGGTATGAG 4944 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 |||||| || || |||||||| ||||| || ||||| |||||||| || | || Sbjct 4945 AAGCGG---TACAAAGTCAAAAACCCGTTTGACTTTATGGAAATGATTTCTCTCCAGGGA 5001 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || || || ||||| || || || |||||||| Sbjct 5002 AAGACAAACTTCTTTGAGAAGCGCGTCGGTGACTATCA 5039 >seq243 Length=69200 Score = 197 bits (218), Expect = 1e-45 Identities = 519/781 (66%), Gaps = 16/781 (2%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||| | ||||||| || || ||||| |||||||| || | ||||||||| | ||| Sbjct 22430 ACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTA 22371 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || ||||| ||||| |||||||| || || || || ||||||||||||| ||||| Sbjct 22370 TATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTG 22311 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||| ||| ||||| ||||| || | ||||||||| || ||||| || | |||||| Sbjct 22310 GACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGAC 22251 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG--TACGTACCGCCCTACCTTTGC 66230 || ||||| | ||| || | | ||| | || | | ||| | |||| |||| | Sbjct 22250 TCGATGATTTGGAACCAGAGCTCTTGCGCCGTGACTGTTTTCGTTC--CCCTGCCTTCAC 22193 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA- 66289 |||| || || ||||| | | ||| || ||| || | || | || | |||| Sbjct 22192 GTTCATATTGCTCGTATAATTTTTCAAACTCTTCTCCATAGCAGTCAGCGAGGCCTGGAG 22133 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || | | || | | || | ||| | || | || ||||| |||||| | | Sbjct 22132 CAATATTAGGGTC-GAAAAGTGTCCAGTTCCCTGATTTTTGCACACGCTTCATAAACAAA 22074 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT 66408 || || |||||||| | || |||||||| || || || || || | || ||| || Sbjct 22073 TCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCGGTGTTT 22014 Query 66409 --TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCG 66466 ||| || || ||| || || || || || |||||||| ||||| | ||||| || Sbjct 22013 CGCTTGAGC--GT-GAGAAATTCGAAAATATCTGCATGCCAGGGTTCTACATAGATTGCA 21957 Query 66467 AACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACA 66526 || | || | | |||||| ||||||||||| || || || || || ||||| ||| Sbjct 21956 AATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGTATCATTGAAAACA 21897 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586 || | ||| || || ||||| || | |||||||| || ||||| ||| | | Sbjct 21896 CGAAGCATTGGAACAAGCCCATTGCTCGTTCCATTGGTTCCAGCGATGTAACTTCCACAT 21837 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA- 66645 || || || ||||| || | || || || || ||||||| || ||| ||||| Sbjct 21836 GCGCGGATGTCGTGCACGTGTAGGCCGATTCCTCCGGCCGATTTGCTGATAAGCGCACAT 21777 Query 66646 -ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGC 66704 ||| || ||| |||||| || || ||||| ||||| | | | | | | | Sbjct 21776 GTTCG--CAGTGTGTCGAATATTCCTGGTATAGAGTCTTCCTTGGTCGCAATTAAGAAAC 21719 Query 66705 ATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAA 66764 | ||| | || ||||| || || | || || || || ||||| |||||||||| Sbjct 21718 AGCTACTCATCTGAGGTTTCGGAGTACCTGCATTAAACAGCGTTGGTGTCGCGTGCGTAA 21659 Query 66765 A 66765 | Sbjct 21658 A 21658 >seq254 Length=68440 Score = 161 bits (178), Expect = 8e-35 Identities = 436/657 (66%), Gaps = 14/657 (2%) Strand=Plus/Plus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 ||||| || || || || || ||||||||||| || || | || || || ||||| ||| Sbjct 31836 AACTTTGGGAGCGCGAGGGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTAC 31895 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 |||| || || ||||||||||| ||| ||||| || | || || || || | Sbjct 31896 TCGATGATCTCCGTGCACAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGAC 31955 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 ||||| ||||||||||| ||||| | || ||||| || || ||||| | || | ||| Sbjct 31956 TTGCGGTTGCATGCATCTTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCA 32015 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT-ACGTACCGCCCTACCTTTGCGT-T 66233 ||||||||| ||| ||| | |||| | || ||| |||| || | | | | | | Sbjct 32016 ATGATGGCGAACCAGAGATCTTGTGCGTCCATCGTCTTGTAC--CCTTTATTATCCTTCT 32073 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCA---CCCCATACTTCGGACAG-ACATGGA 66289 |||| || || ||||| |||| ||||| ||||| |||| || || || Sbjct 32074 CGTACTGCTCATAGAGACTCTCGA---ATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGG 32130 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 | || || ||| | || | ||| | | | | | || || ||| || || Sbjct 32131 CTGTTTTG-GGATCGAAAAGTGTCCATTTGGCCTTTCGCTGCACTCGCTTCATGAAGAGG 32189 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || |||||||| |||||||||| || | || || |||||| ||||| || Sbjct 32190 TCGGGGATCCAGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTTC 32249 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || || | || || | || || || ||||| || || ||||||||||| || Sbjct 32250 TTCTTCAGGTTCAAAAAATCCATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAG 32309 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 ||| | || || || || ||||||||||||||||| || | ||||||||| ||| Sbjct 32310 CTGCCTTTGCGCTTTCCACCTCCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGC 32369 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGC- 66588 | ||| || || | || ||| ||||| || ||| ||| | | | | | || Sbjct 32370 AGCATGGGGACTATTCCATTACTGACCCCATTTGTCCCG-CGAATGTAGCTTCCAGAGCT 32428 Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || | |||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 32429 TCGAATGTTGTGAACATGCAAGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACA 32485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564642165520