Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq96 230 2e-55 seq11 181 8e-41 >seq96 Length=723174 Score = 230 bits (254), Expect = 2e-55 Identities = 524/781 (67%), Gaps = 12/781 (2%) Strand=Plus/Plus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||||| |||||||| | ||| || | ||||||||| || |||| || || | || Sbjct 450727 CACAAACCGCGGAAGGGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGT 450786 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||||| | |||||| ||||| ||||| ||| || ||||| | | || ||| || Sbjct 450787 GTACTCAATAATTTCTGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTT 450846 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||| | ||||| ||||| || |||| |||| | ||| || ||||||| |||| Sbjct 450847 TGACTTCCTGTTGCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGT 450906 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG 66231 ||| | ||| | ||| || | | || | ||| || ||| |||| | |||| | Sbjct 450907 CTCTAAGATAGTAAACCACAGCTCCTGCGCTGGGATCGTGCGCACC-CCCTTCTTTTGTG 450965 Query 66232 TT-CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGG 66288 || |||| | || | | ||| || | | | ||||| ||| |||| || Sbjct 450966 TTTCGTAGCTCACATACAAGGATTCAAAC--TCCTCTCCATAGCAATCGCTAAGACCCGG 451023 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 ||| |||| ||| ||| |||| ||| || || | || |||||| ||| || || Sbjct 451024 GCACATGTGGGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAG 451083 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 ||| |||||||| ||| ||||||||||||| || || ||||| || || | || ||| Sbjct 451084 ATCGGGTATCCAAAGGCCGTAGAAGAGATCCCGCGCACGTTGATCATCCTTACCCGTATT 451143 Query 66409 ---TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || ||| || || ||||| || ||||| || ||||| || ||||| |||| || Sbjct 451144 ACGCTTCAGCA--TC-AGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGC 451200 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || | ||| | || || |||||||| || || |||||||| ||| |||||||| || Sbjct 451201 AAAGGCACCCTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACAC 451260 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 |||| ||| || ||||| ||||| || | ||||| ||||| | || | ||| Sbjct 451261 GCGCAGCATGGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATATAGCTTCCAGA 451320 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 | || || | |||||| | ||| ||||| |||||||| | ||| ||| | || || Sbjct 451321 GGAACGGATGTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCA 451380 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 || || || | | ||||| |||||| || |||| || | | ||| |||| Sbjct 451381 CTCCTTCAGGGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCA 451440 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || || | |||||| || ||| | || |||||| || ||||| ||||| || || Sbjct 451441 CGAGCTCATTTGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAA 451500 Query 66766 G 66766 | Sbjct 451501 G 451501 >seq11 Length=2034363 Score = 181 bits (200), Expect = 8e-41 Identities = 593/904 (66%), Gaps = 23/904 (3%) Strand=Plus/Plus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || ||||| ||||||| || ||||| | || || ||||||| Sbjct 1272585 GCAGGAGAACCCGTACCGGTTCGTGCTGTTCCCGATTCAGTATCACGACATCTGGCGCAA 1272644 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | |||||||||||||||| |||| || || |||| Sbjct 1272645 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGACCTGGGCAGTGACA 1272703 Query 61157 TGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 || || |||| | | | | ||| || || | ||| ||||| || || ||| | || Sbjct 1272704 TGGTGGATTGGGTGAAGCTGAACGA-TGGGGAGCGACACTTCATCAAGCACGTGCTCGCC 1272762 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||| ||||| | ||||| | | || ||| | || Sbjct 1272763 TTCTTCGCGGGAAGCGACGGCATCGTGATCGAGAACCTCGCACAGCGCTTCATGACCGAC 1272822 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | | ||||||||||| ||||| || || ||| | ||||||||| ||||| Sbjct 1272823 GTGAAGATACCGGAGGCGCGTGCGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCAC 1272882 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 |||||| |||| || | | || || ||||||| ||| | |||| || Sbjct 1272883 TCGGAGGCGTACTCGGTGATGCTGGACACATACATCATGGACACTGAGGAAAAGCTCCGC 1272942 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || | |||| ||| ||||||| || | | ||| || | ||||| | Sbjct 1272943 ATGCTACATGCGATCCAGACGATTCCATGCATCCAAAAGAAGGCTGCGTGGGCGGTGCGG 1273002 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| || | | || | || || || || | || ||||| | |||||| Sbjct 1273003 TGGATCGGGAG--CGA-GGTCAGCTTCCAGGAGCGTCTGGTCGCGTTTGCAGCTGTCGAG 1273059 Query 61516 GG--TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 || | | |||||| || || ||| |||| | || ||| | ||||| || || | | Sbjct 1273060 GGCATCTTCTTTTCA--GGGTCATTTTGCGCACTGTTCTGGCTTAAGAAGCGCGGCGTGA 1273117 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 ||||||| || ||||||||||| ||| |||| || |||||||||||| |||| || | Sbjct 1273118 TGCCCGGGCTAACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACT 1273177 Query 61634 TTGCTGTTTTGCTATTCAAACGCTA---TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| |||| | || ||| | | | || | ||| ||| | ||||| | Sbjct 1273178 TTGCGTGCCTGCTGTACACGCGCCACATTAAGCACAAGCTGCCG-CGGTCGCGCGTGCTG 1273236 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCC 61748 ||||| | || ||||| ||||| || || || |||| ||||| |||| Sbjct 1273237 --GAGATCATCACGGATGCGGTGGACATCGAGCACGAGTTCATCTG--CGACGCACTGCC 1273292 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || ||||| ||||| | | || ||| |||||| || || |||||||| || Sbjct 1273293 AGTGCGGCTGATCGGGATGAACTCGGAGCTGATGGGGCAGTACATCGAGTTTGTTGCGGA 1273352 Query 61809 CCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 ||| ||| | || | ||||| | | || | ||| || || || ||||| || | Sbjct 1273353 CCGCCTGCTCGTTGCGCTTGGGGA-GGAGAAGCACTACAACTCGGCGAATCCATTCGACT 1273411 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||||| ||||| |||||| | |||||||| || || |||||||| || ||||| | Sbjct 1273412 TCATGGAGATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGAAGGTTGGCGAGT 1273471 Query 61928 ATCA 61931 |||| Sbjct 1273472 ATCA 1273475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567534845440