Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq16 203 3e-47 seq9 203 3e-47 >seq16 Length=341705 Score = 203 bits (224), Expect = 3e-47 Identities = 599/906 (66%), Gaps = 27/906 (3%) Strand=Plus/Plus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || || || ||||||| ||| |||| | || || ||||||| Sbjct 108816 GCAGGAGAACCCGTACCGGTTTGTGCTGTTCCCGATCCAGTACCACGACATCTGGCGCAA 108875 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || || |||| | | |||||||||||||||| ||||| || || |||| Sbjct 108876 GTACAAGGAGCAAGAGAGCTGCAT-CTGGACGGTGGAGGAGATCGATCTGGGCAGCGACA 108934 Query 61157 TGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 || ||||||| | | | | ||| || || | ||| ||||| || || ||| | || Sbjct 108935 TGGTGGACTGGGCGAAGCTGAACGA-TGGCGAGCGACACTTCATCAAGCACGTGCTTGCC 108993 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || | ||||||||||| | ||||| | | | || ||| | || Sbjct 108994 TTCTTCGCAGGAAGCGACGGTATCGTGATCGAGAACCTCGCGCAGCGCTTCATGACTGAT 109053 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | | ||||||||||| ||||| || || ||| | ||||||||| ||||| Sbjct 109054 GTGAAGATACCGGAGGCGCGTGCGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCAC 109113 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 ||||||| ||| || || | || ||||| ||| || | | || | | | Sbjct 109114 TCGGAGACCTACTCAGTGCTGTTGGACACGTATATCCTCGATCCTGATGAGAAGGTAAGC 109173 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||| | |||| ||| |||||||||| | || ||| || || |||||| | Sbjct 109174 TTGCTGCATGCGATCCAGACGATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGG 109233 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| || | | || | || || || || | || ||||| | ||| ||| Sbjct 109234 TGGATCGGGAG--CGAGAGC-AGCTTCCAGGAGCGCCTGATTGCGTTTGCAGCGGTGGAG 109290 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || || || |||||| ||| | || ||| | ||||| || || | ||| Sbjct 109291 GGCATCTTCTTTTCCGGGTCGTTTTGCGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATG 109350 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 || || ||||||||||| || ||| |||| ||||| |||||||| |||| || ||| Sbjct 109351 CCGGGACTGACCTTCAGTAACGAGCTGATCTCACGGGACGAGGGATTGCACACGGACTTT 109410 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATC----GT--CCGTCGGAGGAGCGTGTG 61689 || | ||| || | |||| | | | || | || ||| ||| | ||||| Sbjct 109411 GCGTGTCTGC--TTTACACGC-ACCACATCAAGCACAAGTTGCCG-CGGTCGCGCGTGCT 109466 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 | ||||| | | ||||| ||||| || || || |||| ||||| ||| Sbjct 109467 G--GAGATCATCACGAATGCGGTCGACATCGAGCACGAGTTCATCTG--CGACGCGCTGC 109522 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | || || || || ||||| | | || ||| ||||| || || ||||| || | Sbjct 109523 CGGTACGTCTGATTGGGATGAACTCGGAGCTGATGGGTCAGTACATCGAGTTTGTCGCGG 109582 Query 61808 ACCGTCTGTTGGTCGATTTGGGTATGAAGCGGA--TCTATAATACGAAAAACCCATTTGA 61865 |||||||| | || | | || ||||| | | ||| ||| ||| |||||| ||||| Sbjct 109583 ACCGTCTGCTCGTTGCGCTTGG--TGAAGAGAAATACTACAATTCGACAAACCCCTTTGA 109640 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 |||||||| ||||| |||||| | || |||||||| || |||||||| | || ||||| Sbjct 109641 CTTCATGGAGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAAGAGGGTCGGCGA 109700 Query 61926 CTATCA 61931 ||||| Sbjct 109701 GTATCA 109706 >seq9 Length=527489 Score = 203 bits (224), Expect = 3e-47 Identities = 557/843 (66%), Gaps = 18/843 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||| | ||| || | |||||| || ||| | |||| ||| | || ||||| | | Sbjct 426785 GGCAGGGCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATA 426844 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| | || ||| || ||||| | || | || || ||| Sbjct 426845 ATCTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTG 426904 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 || || ||||||||||| | |||| ||||| || || || | || | ||| | ||| Sbjct 426905 TTACACGCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATG 426964 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241 || ||| | | |||| | | ||| |||||| || || ||| ||||||| | Sbjct 426965 GCAAACCACAATTCCTGTGCTTGGATCGTGCGTACCCCCATATTTTTTTCTTCGTAACTT 427024 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGTG 66299 ||||| | | |||| || || |||||| ||| || | || ||| || | Sbjct 427025 TCGTACAAGCGTTCAAAATCTTT--CCCATAGCAGTCGCTGAGTCCCGGGCACGTGCAGG 427082 Query 66300 GACACATCAGCGACCAATCACCATCCTG-TTCT--ACACGACGCATAAATAGATCAGGTA 66356 || ||| |||| |||| | ||| |||| ||||| |||||| |||||||| | Sbjct 427083 GATCCATTAGCGTCCAAGTT---TTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAA 427139 Query 66357 TCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC---GTGATTTTTGC 66413 |||| ||| |||||||||||||||| || ||||| ||||| | || || | || Sbjct 427140 TCCAAAGGCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCA 427199 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 ||| || | ||||| || ||||| ||||||||||| |||||||| || || || | || Sbjct 427200 GCA--TC-ACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGC 427256 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 || | || ||||||||||| || ||||||||||| ||| |||||||| ||||||| || Sbjct 427257 CCTTGCGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCA 427316 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || ||||| || || || | ||||| || ||| | || | ||| | || | Sbjct 427317 TAGGCACGAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGA 427376 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCA 66653 | | || |||| || ||||| ||||| |||| || ||| | || || || Sbjct 427377 TGTTATGGACATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCA 427436 Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713 ||| | | ||||| |||||| || | || || | | ||| | || || || | Sbjct 427437 GTGTATCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACGAGAAAACACGAGCTCA 427496 Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC 66773 ||| || || || ||| |||||| || ||||||||||| || ||| | | Sbjct 427497 TTTGTGGCCGTGGCGTCCCGGAGTTGAAGAGTGTTGGTGTAGCGTGAGTGAAGAATCCCC 427556 Query 66774 GAGACATGTAATTGTACGTCTCGA-TGACAGCATCAATGTTTTCGCCATGAATCCCGAGT 66832 ||||| ||| |||||| ||| || |||| || || ||||||||| ||| Sbjct 427557 TTGACATTAAATCATACGTC-CGAGCCACTTTCTCAAGATTGTCAAAATGAATCCCTAGT 427615 Query 66833 GCA 66835 ||| Sbjct 427616 GCA 427618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567331340320