Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8 138 9e-28 seq1 138 9e-28 >seq8 Length=1060349 Score = 138 bits (152), Expect = 9e-28 Identities = 570/880 (65%), Gaps = 27/880 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTC 61122 ||||||| || |||| | || || ||||| | |||||| || ||| |||| || Sbjct 1000306 TGTTCCCGATTCAGTACCATGACATCTGGCGAAAGTACAAGGAGCAGGAGAGCTGTATT- 1000364 Query 61123 TGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAG 61181 ||||||||||| ||| |||| || || || ||| ||||||| | | | | ||| Sbjct 1000365 TGGACGGTGGAAGAGATCGACCTGGGCAGCGATATGGTGGACTGGGTGAAGCTGAACGA- 1000423 Query 61182 CGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGT 61241 || || | ||||||||| || || ||| | |||||||| || | ||||| ||||| Sbjct 1000424 TGGGGAGCGACATTTCATCAAGCACGTGCTTGCGTTCTTCGCGGGAAGCGACGGCATCGT 1000483 Query 61242 CAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 || ||||| | | | || ||| | ||| ||| || | | ||||||||| || Sbjct 1000484 CATCGAGAACCTCGCGCAGCGCTTCATGACGGACGTGAAAATACCAGAGGCGCGTGCGTT 1000543 Query 61302 CTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 |||||| || ||| | ||||||||| | ||||| |||| |||| || || | || Sbjct 1000544 CTACGGGTTTCAGCTGATGATGGAGAATATTCACTCAGAGACGTACTCGGTGCTGCTGGA 1000603 Query 61362 TACGTACATCAGGGAGCGGGCGGA-ACGTGAACGATTGTTCAATGCCATCGAGACGATAC 61420 |||||||| | ||| | || || | || ||| ||| | | || || ||||||| | Sbjct 1000604 CACGTACATTATGGATCAGGATGAGAAGT-TACGTTTGCTGCACGCGATTCAGACGATTC 1000662 Query 61421 CGGCGGTGAAGCGGAAA----GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCT 61476 | ||| | | ||| || || ||||| | ||||| || | | || Sbjct 1000663 C----GTGTATCCAAAATAAGGCCGAGTGGGCTGTACGATGGATTGGGAG--CGAGAGC- 1000715 Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT--TTTTCAGTGGAT 61534 | || || || || | || ||||| | || |||||| | | |||||| || | Sbjct 1000716 AGTTTCCAGGAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCA--GGGT 1000773 Query 61535 CGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCA 61594 | ||| ||| | || ||| | || || || || | ||||| || || |||||||||| Sbjct 1000774 CATTTTGTGCACTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTCAGCA 1000833 Query 61595 ATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT-TGCTATTCAA 61652 | || |||| || ||||| ||||| |||| || ||||| ||||| | || || Sbjct 1000834 ACGAACTGATCTCGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTTGTTGTACTCTC 1000893 Query 61653 ACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT 61712 || ||| | | | | ||| | ||||||| ||||| | | ||||| Sbjct 1000894 ACCACATCAAGAACAAACTACCTCG--GTCGCGTGTGCTGGAGATCATCACGAATGCGGT 1000951 Query 61713 AACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTG 61772 ||||| || || ||| | || || ||||| || | || || ||||| | Sbjct 1000952 GGACATCGAGCACGAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTGGGATGAACTC 1001011 Query 61773 TGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTA 61831 | | ||| ||||| || || |||||||| |||||||| | | | |||| | Sbjct 1001012 CGAGTTGATGGGACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGTGA 1001071 Query 61832 TGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATG 61891 ||| | || || || | | ||| || || || |||||||| ||||| ||||| | | Sbjct 1001072 AGAAAAGCAT-TACAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAAG 1001130 Query 61892 GCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | ||||| || || |||||||| | || ||||| ||||| Sbjct 1001131 GAAAGACTAACTTCTTCGAGAAGAGGGTTGGCGAGTATCA 1001170 >seq1 Length=2329561 Score = 138 bits (152), Expect = 9e-28 Identities = 424/647 (66%), Gaps = 14/647 (2%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||||||| || ||||| || || || | ||||| || ||| ||| || || | | Sbjct 96315 CCACAAACCGCGGCAGGGCGAGGGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATG 96256 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | || || ||||||||||| |||| ||| ||| || || || | | | ||| | Sbjct 96255 TGTATTCCACAATTTCGGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGT 96196 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||| |||||||| || || ||||| | ||| | || || ||||| | ||||| Sbjct 96195 TCGACTTTCGATTGCACGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGG 96136 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||| | || || ||| || | | |||| | ||| || ||| || | | || Sbjct 96135 TCTCCAAAATCGCAAACCACAGCTCCTGCGCCTGAATCGTGCGCACCCCCAT-CTGACGC 96077 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATG 66287 | || ||| || || | | || || | | ||||||| ||| ||| | | Sbjct 96076 GCCTCATAACTTTTATACAACCGCTCAAAC--TCCTCCCCATAACAATCGCTCAGCCCCG 96019 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATC-CTGTTCTACACGACGCATAAAT 66346 |||| |||| ||| ||||| || ||| || || || ||| || || |||||| Sbjct 96018 GACAGGTGTGGGGATCCATCAACGTCCACGTCCCCTCGCTCTTC-ACGCGCTCCATAAAA 95960 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGA 66406 |||||||||||||| || |||| || ||||| || || || || ||||| | ||| Sbjct 95959 AGATCAGGTATCCAAAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCG--- 95903 Query 66407 TTTTTGCGC---AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 | || ||| || || ||||| || || || |||||||| || ||||| || | Sbjct 95902 GTGTTCCGCTTTAACATGACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACC 95843 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | || | |||||||| || ||||| ||||| || || ||| || || || Sbjct 95842 GCAAATGCCCCTTTGCGTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAA 95783 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCT 66583 || |||| |||||| || | |||||| || | || || || ||| |||| ||| Sbjct 95782 ACCCGCAGCATCGGCACCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCG 95723 Query 66584 CGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTT 66630 || || || | |||||| | ||| ||||| || || || | ||| Sbjct 95722 GAGGCTCGAATGTTGTGAACGTGCAGTCCAATCCCCCCTGCTGCCTT 95676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567592989760