Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12768 129 2e-27 seq10962 129 2e-27 >seq12768 Length=9284 Score = 129 bits (142), Expect = 2e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| ||||||||||| |||||||||||||||||| | ||||||||| | |||||| | Sbjct 4681 CTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGAAGCCCGGGGAAACCCA 4622 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||||| | |||| | ||| ||||||||||| |||| |||||||||| || ||| Sbjct 4621 GGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGTAGGATTTGGGTATCGGAGCG 4562 Query 683 A 683 | Sbjct 4561 A 4561 Score = 104 bits (114), Expect = 1e-19 Identities = 123/162 (76%), Gaps = 10/162 (6%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||||||||||||||| || | ||| ||||| | ||| |||| | |||||| | Sbjct 5217 TGTTTGGGAATGCAGTGTCAAGCTGGCAGGTATTTGTCTGCTAAGGTTAAATACAGAGTG 5158 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 5157 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 5098 Query 165 GTTAAAAAGCACGTGAAATTGT-----TGA-AAGGGAAGCGC 200 || | | || || |||| | || ||| || |||||||| Sbjct 5097 GTGACATAGAACCTGAAGTCGTGACAATGACAATGGAAGCGC 5056 >seq10962 Length=6782 Score = 129 bits (142), Expect = 2e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| ||||||||||| |||||||||||||||||| | ||||||||| | |||||| | Sbjct 2553 CTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGAAGCCCGGGGAAACCCA 2494 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||||| | |||| | ||| ||||||||||| |||| |||||||||| || ||| Sbjct 2493 GGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGTAGGATTTGGGTATCGGAGCG 2434 Query 683 A 683 | Sbjct 2433 A 2433 Score = 104 bits (114), Expect = 1e-19 Identities = 123/162 (76%), Gaps = 10/162 (6%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||||||||||||||| || | ||| ||||| | ||| |||| | |||||| | Sbjct 3089 TGTTTGGGAATGCAGTGTCAAGCTGGCAGGTATTTGTCTGCTAAGGTTAAATACAGAGTG 3030 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 3029 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 2970 Query 165 GTTAAAAAGCACGTGAAATTGT-----TGA-AAGGGAAGCGC 200 || | | || || |||| | || ||| || |||||||| Sbjct 2969 GTGACATAGAACCTGAAGTCGTGACAATGACAATGGAAGCGC 2928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079726040600