Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq12768 387 4e-105 seq10962 387 4e-105 >seq12768 Length=9284 Score = 387 bits (428), Expect = 4e-105 Identities = 304/361 (84%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 ||||| ||||| || |||| | | || ||||||||||| |||||||| | |||| Sbjct 2658 TCATTCGATAAGTGAAGCAACGTTCCGAGTGGTGGTATTTCATTTGCGCCGCGA-GGCTG 2716 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| ||| ||||||||| | ||| |||| || | |||| ||||||| |||||||| Sbjct 2717 CCACCTATACTACACCTCCGATGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAACAG 2776 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||||| Sbjct 2777 GGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATA 2836 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || |||| Sbjct 2837 GTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGACG 2896 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 2897 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTCGGTG 2956 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA-ACATCACT 538 ||| || |||| ||||||||||||||||||||||||||||| ||||| || ||| |||| Sbjct 2957 AATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGACAGACACCACT 3016 Query 539 T 539 | Sbjct 3017 T 3017 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 2378 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 2437 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 2438 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 2485 >seq10962 Length=6782 Score = 387 bits (428), Expect = 4e-105 Identities = 304/361 (84%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 ||||| ||||| || |||| | | || ||||||||||| |||||||| | |||| Sbjct 534 TCATTCGATAAGTGAAGCAACGTTCCGAGTGGTGGTATTTCATTTGCGCCGCGA-GGCTG 592 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| ||| ||||||||| | ||| |||| || | |||| ||||||| |||||||| Sbjct 593 CCACCTATACTACACCTCCGATGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAACAG 652 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||||| Sbjct 653 GGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATA 712 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || |||| Sbjct 713 GTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGACG 772 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 773 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTCGGTG 832 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA-ACATCACT 538 ||| || |||| ||||||||||||||||||||||||||||| ||||| || ||| |||| Sbjct 833 AATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGACAGACACCACT 892 Query 539 T 539 | Sbjct 893 T 893 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 254 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 313 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 314 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634991152256