Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq9884 140 1e-28 seq8662 140 1e-28 seq8352 140 1e-28 seq8316 140 1e-28 seq7915 140 1e-28 seq6838 140 1e-28 seq3529 140 1e-28 seq2172 140 1e-28 seq920 140 1e-28 >seq9884 Length=7579 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 6050 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 6109 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 6110 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 6169 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 6170 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 6226 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 6227 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 6284 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 6285 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 6344 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 6345 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 6404 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 6405 ATCGCATGGCTAAGTACAATCAGTT 6429 >seq8662 Length=8074 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 6318 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 6377 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 6378 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 6437 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 6438 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 6494 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 6495 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 6552 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 6553 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 6612 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 6613 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 6672 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 6673 ATCGCATGGCTAAGTACAATCAGTT 6697 >seq8352 Length=8370 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 152 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 211 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 212 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 271 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 272 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 328 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 329 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 386 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 387 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 446 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 447 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 506 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 507 ATCGCATGGCTAAGTACAATCAGTT 531 >seq8316 Length=4787 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 3804 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 3863 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 3864 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 3923 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 3924 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 3980 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 3981 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 4038 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 4039 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 4098 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 4099 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 4158 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 4159 ATCGCATGGCTAAGTACAATCAGTT 4183 >seq7915 Length=1055 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 422 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 481 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 482 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 541 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 542 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 598 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 599 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 656 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 657 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 716 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 717 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 776 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 777 ATCGCATGGCTAAGTACAATCAGTT 801 >seq6838 Length=2698 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 2155 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 2214 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 2215 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 2274 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 2275 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 2331 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 2332 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 2389 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 2390 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 2449 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 2450 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 2509 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 2510 ATCGCATGGCTAAGTACAATCAGTT 2534 >seq3529 Length=3253 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 1908 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 1967 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 1968 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 2027 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 2028 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 2084 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 2085 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 2142 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 2143 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 2202 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 2203 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 2262 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 2263 ATCGCATGGCTAAGTACAATCAGTT 2287 >seq2172 Length=3888 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 2155 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 2214 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 2215 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 2274 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 2275 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 2331 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 2332 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 2389 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 2390 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 2449 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 2450 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 2509 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 2510 ATCGCATGGCTAAGTACAATCAGTT 2534 >seq920 Length=2293 Score = 140 bits (154), Expect = 1e-28 Identities = 265/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| ||||| || |||| |||||||| |||| ||||| || ||||| || ||||| Sbjct 1243 AAATATCCAATTATATCTATTGAAGATGGCATGGCTGAAAATGATTGGGAAGGATGGAAG 1302 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 |||||| || | ||| | | |||| || || ||||| || || || ||||| Sbjct 1303 ATTCTTACAGATAAATTAGGTAATGATATTCAGTTAGTAGGTGATGATTTATTTGTAACA 1362 Query 2638 AACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTTATC 2694 || ||| | ||| |||||| || | | | | | || || || || | || Sbjct 1363 AATACTAATATTCTTAGAAAAGGCAT---AAATGATGGTATAGCAAATTCTATTTTGATT 1419 Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 ||| |||| ||||| || ||| | || ||||| ||| || | |||||||| |||| Sbjct 1420 AAAATTAATCAAATAGGCACTATTACAGAAACATTTTCTGCGGTTGAAATGGC-AAAGC- 1477 Query 2755 GCT--GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | | || || ||| | | || || || |||||||| || ||||| ||||| || |||| Sbjct 1478 GTTACGGTTATACATCTATTGTTTCCCATCGTTCAGGAGAGACTGAGGATTCTACTATCG 1537 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 ||||||| || || || | || || ||||| || ||||| ||||| ||| | ||| Sbjct 1538 CTGATATAGCTGTCGCTTCAAATTCTATGCAAATAAAAACAGGGTCATTATCAAGATCTG 1597 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| ||||| || || Sbjct 1598 ATCGCATGGCTAAGTACAATCAGTT 1622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156014734045968