Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq9708 86.0 2e-11 seq7598 86.0 2e-11 seq5977 86.0 2e-11 >seq9708 Length=9867 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| || || |||| | | ||||||||||||| ||| ||||| |||||||| ||| Sbjct 2822 GTCATACGCGAAGGGATGGCGTGCGGGTTGATGATGAGGTCCGGCACAATGCCGTC-GCG 2880 Query 364490 G-TAAAGGGCATAT-CTTCGGGAGGAAC-GATGAGACCAATGGTTCCCTTTTGCGCATAG 364546 | | ||||||| || || | || ||||| || | || | || ||||| ||| ||| Sbjct 2881 GTTGAAGGGCAGATCCTCCTGGCGGAACTGA--ATGCCGTTTGTGCCCTTCTGCCCATGC 2938 Query 364547 CGAGAAGCAAACTTGTCGCCAATG 364570 ||| | ||||||||||||||| Sbjct 2939 CGACTACAGAACTTGTCGCCAATG 2962 >seq7598 Length=6087 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| || || |||| | | ||||||||||||| ||| ||||| |||||||| ||| Sbjct 4947 GTCATACGCGAAGGGATGGCGTGCGGGTTGATGATGAGGTCCGGCACAATGCCGTC-GCG 4889 Query 364490 G-TAAAGGGCATAT-CTTCGGGAGGAAC-GATGAGACCAATGGTTCCCTTTTGCGCATAG 364546 | | ||||||| || || | || ||||| || | || | || ||||| ||| ||| Sbjct 4888 GTTGAAGGGCAGATCCTCCTGGCGGAACTGA--ATGCCGTTTGTGCCCTTCTGCCCATGC 4831 Query 364547 CGAGAAGCAAACTTGTCGCCAATG 364570 ||| | ||||||||||||||| Sbjct 4830 CGACTACAGAACTTGTCGCCAATG 4807 >seq5977 Length=6085 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 364430 GTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCG 364489 |||||||| || || |||| | | ||||||||||||| ||| ||||| |||||||| ||| Sbjct 4953 GTCATACGCGAAGGGATGGCGTGCGGGTTGATGATGAGGTCCGGCACAATGCCGTC-GCG 4895 Query 364490 G-TAAAGGGCATAT-CTTCGGGAGGAAC-GATGAGACCAATGGTTCCCTTTTGCGCATAG 364546 | | ||||||| || || | || ||||| || | || | || ||||| ||| ||| Sbjct 4894 GTTGAAGGGCAGATCCTCCTGGCGGAACTGA--ATGCCGTTTGTGCCCTTCTGCCCATGC 4837 Query 364547 CGAGAAGCAAACTTGTCGCCAATG 364570 ||| | ||||||||||||||| Sbjct 4836 CGACTACAGAACTTGTCGCCAATG 4813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884577954833396