Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1205 387 4e-105 >seq1205 Length=3629 Score = 387 bits (428), Expect = 4e-105 Identities = 304/361 (84%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 ||||| ||||| || |||| | | || ||||||||||| |||||||| | |||| Sbjct 2141 TCATTCGATAAGTGAAGCAACGTTCCGAGTGGTGGTATTTCATTTGCGCCGCGA-GGCTG 2199 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| ||| ||||||||| | ||| |||| || | |||| ||||||| |||||||| Sbjct 2200 CCACCTATACTACACCTCCGATGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAACAG 2259 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||||| Sbjct 2260 GGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATA 2319 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || |||| Sbjct 2320 GTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGACG 2379 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 2380 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTCGGTG 2439 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA-ACATCACT 538 ||| || |||| ||||||||||||||||||||||||||||| ||||| || ||| |||| Sbjct 2440 AATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGACAGACACCACT 2499 Query 539 T 539 | Sbjct 2500 T 2500 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 1861 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 1920 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 1921 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 1968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635150911296