Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 235 4e-57 seq1609 150 1e-31 >seq2 Length=121565 Score = 235 bits (260), Expect = 4e-57 Identities = 522/779 (67%), Gaps = 8/779 (1%) Strand=Plus/Plus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||||||||| || || | || || |||||||| || || ||||||| | ||| Sbjct 25755 CACAAACTTGGACAGCGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGT 25814 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||||||| || || |||||||| ||| ||| |||||||| | ||||| || || Sbjct 25815 GTACTCGATGATCTCCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTT 25874 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 |||| ||||| ||||||||||| | |||| |||| ||| || || | || || Sbjct 25875 CGACTTGGCGTTGCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGA 25934 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG 66231 ||| | ||||| ||| || | | |||| || || || | || |||| || Sbjct 25935 CTCCAGAATGGCAAACCACAGCTCCTGCGCCTGGACGGTGCGGATGCCCATACCCTTCGC 25994 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 |||||| |||||||| | ||||| || || ||| || | || Sbjct 25995 TTCGTACCCCTCGTAGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGT 26054 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATC-CTGTTCTACACGACGCATAAATAGAT 66350 | ||| || ||| |||| ||| | || || || ||| || || ||| || || | Sbjct 26055 CGTGTTGGGGTCCATGAGCGTCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGT 26113 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410 | || |||||||| ||||||||||| ||||| || || || ||||| |||| | | | Sbjct 26114 CCGGGATCCAGAGCGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCC---AGTGT 26170 Query 66411 TGCGC---AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 ||||| | | |||||||| ||||||||||| ||||| || || ||||| ||||||| Sbjct 26171 TGCGCTTCATGAGCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGA 26230 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 | | |||| | || || ||||| || || || |||||||| || ||||| | || | Sbjct 26231 AGGCGCCCTTGCGCTTACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGC 26290 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTG 66587 | | |||||| | ||| ||||| || |||| |||||||| ||||| | || | Sbjct 26291 GGATCATCGGCATGAGGCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCG 26350 Query 66588 CCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT 66647 | || || | ||| | || | ||||| || || |||| ||| ||| | || || | Sbjct 26351 CGCGGATGTTGTGGATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACT 26410 Query 66648 CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | || || | | ||||| || ||| ||| |||| || | | ||| |||| | Sbjct 26411 CCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACG 26470 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 | || | || || ||||| || |||| |||||| ||||| || |||||||| ||| Sbjct 26471 AGCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAG 26529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||||||| ||| || || || || ||||||||||| |||| ||| || ||| | | Sbjct 25211 GGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACT 25270 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| ||||| || | || || || || ||||| || |||| | || |||| Sbjct 25271 CGTTGTTGCCCAGAATCTGCGACGTGGAGGCGGTCGGCATCGGCGCGAGGAGCAGCGAGT 25330 Query 65553 TTCGCA 65558 | |||| Sbjct 25331 TGCGCA 25336 >seq1609 Length=2085 Score = 150 bits (166), Expect = 1e-31 Identities = 570/884 (64%), Gaps = 19/884 (2%) Strand=Plus/Plus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || | ||| | ||||||||| ||| | || || ||||||| Sbjct 695 GCAGGAGAACCCCTACCGCTACGTGCTCTTCCCCATCCAGTTCCACGACATCTGGCGCAA 754 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||| |||||||| |||| | || ||| Sbjct 755 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGCTGGAGGAGATCGACCTCGGCAGCGACC 813 Query 61157 TGAATGACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 | ||||||| ||| | | |||| || || || || ||||| || || ||| ||| Sbjct 814 TCGCCGACTGGGTCAAGC--TGAGCGAG-GGCGAGCAGCACTTCATCAAGCACGTGCTGG 870 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGG 61273 | ||||| |||| ||||| |||||| ||||| | || || ||| | | Sbjct 871 CCTTCTTCGCCGGCAGCGACGGCATCGTCGTCGAGAACCTCGCGGTGCGCTTCATGTCCG 930 Query 61274 AGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCC 61333 | || | ||| | |||||||| ||||||||||||||| | |||||||| ||| Sbjct 931 ACGTCAAGGTGCCCGAGGCGCGCGCCTTCTACGGCTTCCAGCTCATGATGGAGAACATCC 990 Query 61334 ACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGA 61391 |||| |||| |||| || || |||| || ||||||| || |||| | ||| || Sbjct 991 ACTCCGAGACGTACTCGGTGCTGCTCGACACCTACATCACGGACAGCGCGGAGAAGCTG- 1049 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || || | | |||||| |||| || || | || ||| || | |||||| | Sbjct 1050 -CGCCTGCTGCACGCCATCCAGACCATCCCCTGCATCCAGAAGAAGGCCAACTGGGCCGT 1108 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| ||| | || | || || || | | | || |||| || Sbjct 1109 GCGCTGGATCGGCAG---CGCCGCCAGCTTCCAGGAGCGGCTCATCGGCTTCGCGGCCGT 1165 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || | | ||||| ||| | ||||| || || | Sbjct 1166 CGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCGT 1225 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 |||||||| || ||||||||||| ||| | || || |||||||||||| |||| || Sbjct 1226 GATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGA 1285 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || |||| | ||| || | | | | | || ||||| ||| Sbjct 1286 CTTCGCCTGCCTGCTGTACAACAGCCACATCAAACACAAGCTGCCGCGCGAGCGCGTGCT 1345 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCC 61749 || || | || || || ||||| |||| || |||| ||||| ||||| Sbjct 1346 GGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTG--CGACGCGCTGCCC 1403 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 || |||||||||||||| | || ||| ||||| || || || || || ||| Sbjct 1404 GTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTCGCGGAC 1463 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 || ||| | || |||| || || | ||| || | | ||||| || || ||| Sbjct 1464 CGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCCACCAACCCCTTCGACTTC 1523 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| ||||| || || |||||||| || || |||||||| Sbjct 1524 ATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGAGAA 1567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553454229280