Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20oncopelti_20[genbank_20GCA_5F000482165.1_202013-10-25] 8,626 sequences; 24,962,918 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5040 251 2e-64 seq3065 241 4e-61 seq6530 111 5e-22 seq4135 111 5e-22 >seq5040 Length=1478 Score = 251 bits (278), Expect = 2e-64 Identities = 210/256 (82%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 ||||| ||||| || |||| | | || ||||||||||| |||||||| | |||| Sbjct 255 TCATTCGATAAGTGAAGCAACGTTCCGAGTGGTGGTATTTCATTTGCGCCGCGA-GGCTG 197 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| ||| ||||||||| | ||| |||| || | |||| ||||||| |||||||| Sbjct 196 CCACCTATACTACACCTCCGATGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAACAG 137 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||||| Sbjct 136 GGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATA 77 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || |||| Sbjct 76 GTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGACG 17 Query 420 AGGCATTTGGCTACCT 435 |||||||||||||||| Sbjct 16 AGGCATTTGGCTACCT 1 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 557 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 498 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 497 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 450 >seq3065 Length=2593 Score = 241 bits (266), Expect = 4e-61 Identities = 166/185 (90%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 357 ATAGTAGATA-GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||| || ||||||| ||||||||| |||||||||||||||||||| |||||| || Sbjct 2593 ATAGTAACTACGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAA 2534 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2533 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTC 2474 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA-ACAT 534 | ||||| || |||| ||||||||||||||||||||||||||||| ||||| || ||| Sbjct 2473 GGTGAATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGACAGACAC 2414 Query 535 CACTT 539 ||||| Sbjct 2413 CACTT 2409 >seq6530 Length=983 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 804 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 745 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 744 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 697 >seq4135 Length=1912 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 874 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 933 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 934 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635058947648