Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000188675.2_202012-10-02] 27,019 sequences; 38,589,511 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20180 181 8e-41 seq15883 86.0 5e-12 >seq20180 Length=1155 Score = 181 bits (200), Expect = 8e-41 Identities = 584/893 (65%), Gaps = 15/893 (2%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| ||||||||| |||| ||| | || || ||| |||| | ||| Sbjct 59 GAACCGCTTTTGCGTGAGAATCCTGACCGTTACGTGATCTTTCCGATCAAGTACCATGAT 118 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || ||| | |||||| | || || ||| | | ||||||||||||||| ||||||| Sbjct 119 ATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGATTT 177 Query 61146 GTCCAAAGACATGAATGACTGGGAGC-GTTTATCGA-GCGGTGAACAACATTTCATTAAA 61203 | || ||| || ||||||||| | | | ||| | || ||| | || || || Sbjct 178 GAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTT--ATCAAG 235 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| |||||||||||||||| || || || || ||||| | | | || Sbjct 236 CACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGG 295 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | ||| || ||||| |||||| ||| || |||||||| |||||||||||||| Sbjct 296 TTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATT 355 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| || || ||||| | ||| || || | ||||||||||||| || || | Sbjct 356 GAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAG 415 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || || |||| | ||||| ||| || ||| | || || || | Sbjct 416 GAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATCCAGAAAAAGGCCAAC 475 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 ||||| | |||||| ||| || | | | | |||| ||||| | | || ||| Sbjct 476 TGGGCGATTCGGTGGATCCGCAG--CAGCAG-TTCGTTTGCCGAACGCCTTGTTGCCTTT 532 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 |||| ||| || ||| | || || || || || || | || ||| | ||||| Sbjct 533 GCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAG 592 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATG 61623 ||||| || |||||||| ||||| ||||| ||||| | || || || || || ||| || Sbjct 593 CGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTG 652 Query 61624 CATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 || || ||||| || | | | || ||| | ||||| | | |||| Sbjct 653 CACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAACAAGCTACCAACGGAG 712 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACG 61741 ||| | | |||||| || | ||||| || || | || || |||| |||| Sbjct 713 CGTATTCGCGAGATTATTTGCAGTGCGGTGGACATTGAGCGTGAGTTCATCTG--TGACT 770 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | | || || || | || ||||| | | |||||| ||| || || |||| Sbjct 771 CCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGACGTACATAGAGTTTG 830 Query 61802 TTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCA 61860 | || || || ||| |||| | | |||| | | |||| ||| || | || |||||| Sbjct 831 TGGCGGATCGGCTGCTGGTGGCACTTGGCAACG-AGCGTCACTACAACTCAAAGAACCCA 889 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || || || ||||| ||||| || ||| | || ||||| || || || ||||| Sbjct 890 TTCGACTTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTCTTTGAGAA 942 >seq15883 Length=1215 Score = 86.0 bits (94), Expect = 5e-12 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| ||||||||| |||| ||| | || || ||| |||| | ||| Sbjct 276 GAACCGCTTTTGCGTGAGAATCCTGACCGTTACGTGATCTTTCCGATCAAGTACCATGAT 217 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || ||| | |||||| | || || ||| | | ||||||||||||||| ||||||| Sbjct 216 ATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGATTT 158 Query 61146 GTCCAAAGACATGAATGACTGGGAG-CGTTTATCG-AGCGGTGAACAACATTTCATTAAA 61203 | || ||| || ||||||||| | | | || || || ||| | || || || Sbjct 157 GAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTC--TTTATCAAG 100 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| |||||||||||||||| || || || || ||||| | | | || Sbjct 99 CACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGG 40 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||| | ||| || ||||| |||||| ||| || ||| Sbjct 39 TTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437083218160