Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24850 848 0.0 seq27875 131 7e-28 seq17968 131 7e-28 seq591 131 7e-28 seq28560 122 4e-25 seq26076 98.7 4e-18 seq25003 98.7 4e-18 seq9077 98.7 4e-18 >seq24850 Length=1243 Score = 848 bits (940), Expect = 0.0 Identities = 588/665 (88%), Gaps = 1/665 (0%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || || |||| ||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 18 CCATGCGAAGTTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTA 77 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 78 AATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAA 137 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || | |||||||| ||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 138 AGGTTAAAAGCACCTTGAAAAGGGAGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCG 197 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259 |||||||||||||| | || | ||||| | ||| ||| ||| |||| | Sbjct 198 CTTGCAACCAGACTCGGTCGTGGGGGCTCAGCGGGCATGCGTGCCCGTGTACTCCCCCAT 257 Query 260 GGTCAGG-CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 | || || |||||||||| || |||||| || |||||||| | ||||||| | ||| | Sbjct 258 GCTCCGGGCCAGCATCAGTTCTGGCGGTTGGTTAAAGGCCTCTGGAATGTATCGTCCTCC 317 Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378 ||| || |||||||| |||| | ||||||||| ||| ||||||||| |||||| |||| Sbjct 318 GGGACGTCTTATAGCCAGGGGCGCAATGCGGCCAGCCGGGACTGAGGAACGCGCTTCGGC 377 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 378 ACGGATGCTGGCATAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAA 437 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 |||| | ||||||||| |||||||||||||||||||| | |||||| ||||||||||||| Sbjct 438 CATCCACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGCAGTGAAAGCGAACGGAGGTGGG 497 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 498 AGCCCGCAAGGGTGCACCATCGACCGATCCTGAAGTCTTCGGATGGATTTGAGTAAGAGC 557 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 GTGGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 617 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 618 CTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 677 Query 679 GGCGA 683 ||||| Sbjct 678 GGCGA 682 >seq27875 Length=1739 Score = 131 bits (144), Expect = 7e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||| ||| | ||||| ||||||||||| |||||||||||||||||| | ||||| Sbjct 775 TTGAGTTGGAGTGTGCCTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGA 716 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| | |||||||| ||||||||| | |||| | ||| ||||||||||| ||| | Sbjct 715 AGCCCGGGGAAACTCGGGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGCATGA 656 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||| || |||| Sbjct 655 TTTGGGTATCGGAGCGA 639 Score = 98.7 bits (108), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 || |||||| ||||| || | ||| ||||| | ||| | |||| |||||| | | Sbjct 1402 TGCTTGGGAGTGCAGTGTCAAGCTGGCAGGTATGTGTCTGCCAAAGTTAAATACAGAGTA 1343 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 1342 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 1283 Query 165 GTTAAAAAGCACGTGAA 181 || | | || || |||| Sbjct 1282 GTGACATAGAACCTGAA 1266 >seq17968 Length=979 Score = 131 bits (144), Expect = 7e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||| ||| | ||||| ||||||||||| |||||||||||||||||| | ||||| Sbjct 119 TTGAGTTGGAGTGTGCCTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGA 178 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| | |||||||| ||||||||| | |||| | ||| ||||||||||| ||| | Sbjct 179 AGCCCGGGGAAACTCGGGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGCATGA 238 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||| || |||| Sbjct 239 TTTGGGTATCGGAGCGA 255 >seq591 Length=266238 Score = 131 bits (144), Expect = 7e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||| ||| | ||||| ||||||||||| |||||||||||||||||| | ||||| Sbjct 241852 TTGAGTTGGAGTGTGCCTGTTTGGACCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGA 241911 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| | |||||||| ||||||||| | |||| | ||| ||||||||||| ||| | Sbjct 241912 AGCCCGGGGAAACTCGGGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGCATGA 241971 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||| || |||| Sbjct 241972 TTTGGGTATCGGAGCGA 241988 >seq28560 Length=2228 Score = 122 bits (134), Expect = 4e-25 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||| ||| | ||||| | |||||||| |||||||||||||||||| | ||||| Sbjct 2208 TTGAGTTTGAGTGTGCCTGTTTGACCCCGAAAGGTGGTGAACTATGCCTGAACAAGGTGA 2149 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||| | |||||||| ||||||||| | |||| | ||| ||||||||||| ||| | Sbjct 2148 AGCCCGGGGAAACTCGGGTGGAGGCCTGTAGCGATGCTGACGTGCAAATCGCTCGCATGA 2089 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||| || |||| Sbjct 2088 TTTGGGTATCGGAGCGA 2072 >seq26076 Length=1367 Score = 98.7 bits (108), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 || |||||| ||||| || | ||| ||||| | ||| | |||| |||||| | | Sbjct 357 TGCTTGGGAGTGCAGTGTCAAGCTGGCAGGTATGTGTCTGCCAAAGTTAAATAAAGAGTA 298 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 297 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 238 Query 165 GTTAAAAAGCACGTGAA 181 || | | || || |||| Sbjct 237 GTGACATAGAACCTGAA 221 >seq25003 Length=1256 Score = 98.7 bits (108), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 || |||||| ||||| || | ||| ||||| | ||| | |||| |||||| | | Sbjct 901 TGCTTGGGAGTGCAGTGTCAAGCTGGCAGGTATGTGTCTGCCAAAGTTAAATACAGAGTA 960 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 961 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 1020 Query 165 GTTAAAAAGCACGTGAA 181 || | | || || |||| Sbjct 1021 GTGACATAGAACCTGAA 1037 >seq9077 Length=853 Score = 98.7 bits (108), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 || |||||| ||||| || | ||| ||||| | ||| | |||| |||||| | | Sbjct 386 TGCTTGGGAGTGCAGTGTCAAGCTGGCAGGTATGTGTCTGCCAAAGTTAAATACAGAGTA 327 Query 108 G--AGACCGATAGCGCACAAGTAGAGTGATCGAAAGAT-GAAAAGCACTTTGGAAAGAGA 164 | |||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| Sbjct 326 GGAAGACCGATAGCGAACAAGTAGCGTGAGCGAAAGTTTGAAAAGCACTTTGGAAAGAGA 267 Query 165 GTTAAAAAGCACGTGAA 181 || | | || || |||| Sbjct 266 GTGACATAGAACCTGAA 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079367332250